Betaproteobacteria bacterium UKL13-2: AEM42_07335
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Entry
AEM42_07335 CDS
T04342
Name
(GenBank) hypothetical protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
beb
Betaproteobacteria bacterium UKL13-2
Pathway
beb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
beb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AEM42_07335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
beb03019
]
AEM42_07335
03009 Ribosome biogenesis [BR:
beb03009
]
AEM42_07335
Enzymes [BR:
beb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AEM42_07335
Messenger RNA biogenesis [BR:
beb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AEM42_07335
Ribosome biogenesis [BR:
beb03009
]
Prokaryotic type
rRNA processing factors
AEM42_07335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AMS32259
LinkDB
All DBs
Position
complement(1627087..1629864)
Genome browser
AA seq
925 aa
AA seq
DB search
MKRMLFNATQAEELRVAIVDGQKLVDLDIEHAGQEQRKSNIYKAKVTRVEPSLEAIFVDY
GSERHGFLPFKELTREYVQGEDGEGTRGKIAQNLRVGQELLVQVEKDERGNKGAALTTYI
SLAGRYLVLMPNNPRGGGVSRRVEGEDRAELRETLDQLQVPEGMSIIARTAGIGRNAEEL
QWDMNYLVQLWEAIEGAGREVKGPELIYLESSLVVRAIRDLFQPDVGEILVDTQEIFEQA
QSFMSTVMPSNVSKVKLYKDDVPLFSRFQIEHQIETAYRRDVSLPSGGAIIIDHTEALVS
VDVNSARATKGHDIEETAFRTNCEAADEIARQLRLRDLGGLVVIDFIDMESSKNQREVEN
RLRDALKHDRARVQTGKISRFGLMELSRQRLQPALSESSYIPCPRCHGVGHIRDTASSAL
HVLRIIQEEAMKESTVAVHCQVPVDVATFLLNEKRQDIHAIEVRFKVNVLLIPNVHIETP
NYEIERLRHDSEKLDVAKASYELVNKPVDELAMKLPTAAEAKPARPEPVVKGITPDQPAP
MSSEPIAREDRQAARTPLQSASAKAATPAPSLWKRFVGLFGGDSVPTVTAPTTETDANKG
AKNARDGNREGRGDRNNRGGERNDRGARNRSDRNDRGNKGERKDGKRAEGRNEGRNEPRG
DRPPKGGNSGGERNQPPRQNKPDEAVIATATGGAPEQASAPPPRNQQPRPALEARPPETS
EDGEGRSRRRRGRGGRGRGGRELGDNRNTGAPQDGAVVTQNDAPAMPANAPELSPPAMST
PVAPVPVQQPVVAAIPAMVSAPTAAPPAAPPATPPAAPSAATAPAPAATVYSSATAPRAP
VDQIPNVSPVRSQPRPRRERDTAGQEPLVFIETDAGKAAATSVQQATLAVIEPQRRSTPR
PRRERTVVNEPLQVVETKAELPPQA
NT seq
2778 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgttattcaacgcaacccaagccgaagagctccgtgttgcaattgtcgac
ggccagaaactcgtcgatctcgatatcgaacacgcgggccaagagcagcgtaagtcgaac
atctacaaggcgaaagtcacccgcgtcgagccatcgctcgaagccattttcgttgactac
ggctcggagcgccatgggttcctgccgttcaaggaactaacgcgggagtacgtacaaggt
gaagacggcgaaggcacacgcggcaagatcgcgcaaaacctgcgcgtcgggcaagagctg
ctcgttcaagtcgaaaaagacgaacgcggcaacaaaggcgcggcgctcaccacctacatc
tcgctggctggccgttatttggtactgatgccgaataatccacgcggcggcggcgtatca
cgacgtgtcgaaggcgaagaccgtgccgaattacgagagacgctcgaccaattacaagtg
ccggaaggcatgtcgatcattgcccgtacagccggtatcggtcgtaatgccgaagagcta
cagtgggacatgaattatctggtgcaactctgggaagccattgaaggcgcgggccgcgaa
gtaaaagggccggaactcatttatctcgagtcgagcttggtggtacgtgcgatccgcgat
ctgttccagccggatgtcggcgaaatcctcgtcgatacccaagaaatttttgagcaggcc
cagtcgtttatgtcgacggtgatgccgtcgaatgtcagcaaggtcaagctgtacaaagac
gacgttcccctgttttcgcgcttccaaatcgaacaccagatcgagacggcttatcgccgc
gatgtatcgttgccctccggtggcgccatcatcatcgaccataccgaagccttggtctcg
gtcgacgtcaactccgcgcgtgccaccaaaggacatgacattgaggagaccgcgtttcgc
accaactgcgaagcggcagacgaaattgcgcgccagcttcgcctgcgtgatttgggcggt
ctggtggtcatcgatttcattgacatggaatcgagcaagaaccaacgcgaagttgaaaat
cgcctgcgcgatgcgctcaagcatgatcgtgcgcgtgtacaaaccggcaagatttcgcgt
tttgggttgatggaattgtcgcgccagcgtctgcagcccgccctctcagaatccagctac
atcccgtgcccgcgttgccacggtgtcggacacattcgtgataccgcttcttcagcactg
cacgtgttgcgcatcattcaggaagaggcgatgaaagaaagcacggtggcggtgcattgc
caagtgccggtcgacgtcgccaccttcctcttgaatgaaaagcgccaagacatccacgcc
attgaagtgcgcttcaaggtaaatgtgttgctgattcccaatgtccacatcgagacaccc
aactacgaaatcgaacgtctgcgtcacgattccgaaaaactcgacgtggccaaagcatcc
tacgagttagtcaacaagccagtcgatgaactcgccatgaagctgccaactgcagccgag
gcaaaaccagctcgcccggagccagtggtcaagggcattacccccgaccaaccagcaccg
atgtcatctgagccgattgcacgcgaagatcggcaagcagcacgcacgccgttgcagtcg
gcgtcggcaaaagcggcaacgccagcaccatcgctttggaagcgttttgtcggcttattc
ggcggcgatagtgtgccaacagtcaccgcgccgacgactgaaaccgacgccaataaaggt
gccaaaaacgcgcgagacggcaaccgtgaaggacgcggtgaccgcaacaatcgtggtggt
gagcgcaacgaccggggtgcgcgtaaccgtagtgatcgtaatgatcgcggcaacaaaggc
gaacgtaaagacggcaaacgtgcggagggtcgcaatgagggtcgcaacgaaccccgcggt
gatcgtccgcccaaggggggcaatagcggcggcgaacgcaaccaaccaccacgccagaac
aaaccggatgaggcagtcatcgccaccgccaccggcggggcaccagagcaagcatcagcg
ccaccgccacgcaaccagcaaccacgccctgccttggaagcacggccaccagagacgagc
gaagatggtgaaggccgtagccgccgtcgtcgtggccgaggtggacgtggtcgcggtgga
cgtgagctaggtgacaatcgcaacacaggcgcaccgcaagacggtgccgttgtgacacaa
aacgatgcaccggcaatgccggccaacgcacctgagttgtcgccgccggcaatgtccaca
ccggtggcgccggtgcccgtgcagcagccggttgtggctgcaatcccggccatggtgagc
gcaccgaccgctgcccctcccgctgcccctcccgctacccctcccgctgcgccttccgct
gccactgctcccgcgccagcggcaacggtctacagttcagcgacggcaccccgcgcaccg
gtggaccaaatacccaacgtgtcgcccgttcgcagccaaccacgcccacggcgggaacgc
gataccgccggacaagagccgctggtgttcatcgaaaccgacgccggcaaagcggcggca
accagcgttcagcaagccacgctcgccgtcattgagccgcagcgccgtagcacaccacgt
ccgcgtcgtgaacgcaccgtcgtgaacgaaccgctgcaagtggtagaaacaaaagccgaa
ttaccgccacaggcataa
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