Betaproteobacteria bacterium UKL13-2: AEM42_12725
Help
Entry
AEM42_12725 CDS
T04342
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
beb
Betaproteobacteria bacterium UKL13-2
Pathway
beb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
beb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AEM42_12725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
beb03019
]
AEM42_12725
03016 Transfer RNA biogenesis [BR:
beb03016
]
AEM42_12725
Enzymes [BR:
beb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
AEM42_12725
Messenger RNA biogenesis [BR:
beb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AEM42_12725
Transfer RNA biogenesis [BR:
beb03016
]
Prokaryotic type
tRNA degradation factors
AEM42_12725
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
KH_2
KH_KhpA-B
KH-I_KHDC4-BBP
S1_RRP5
OB_RRP5_4th
KH_NusA_2nd
DNA_pol3_a_NI
Motif
Other DBs
NCBI-ProteinID:
AMS33020
LinkDB
All DBs
Position
complement(2848048..2850198)
Genome browser
AA seq
716 aa
AA seq
DB search
MKAIKKTLQYGRHTLTIETGEIARQADGAVLVSLDDTVVLVTCVARRDAKEGQDFFPLTV
DYQEKTFAAGKIPGGFFKREGRPSEKEILTSRLIDRPLRPLFPDGFYNEVQIIATVLSID
PEIDSDIPAMIGASAAVTLAGVPFEGPIGAARVGYIDGQYILNPTKTELETSKLNLIVAG
TNSAVLMVESEAMELPEDVMLGSVVFGHEQQQAVINAILDLADEAGKDSWAWTPPAPPQA
LIDQINAMAANDLNDAFRIKSKGARSEKLSEINKRVIATLCTGEEGAPDKNTVSSLLFAI
ESKIVRGQILNGEPRIDGRDTRTVRPISIRTSVLPRTHGSVLFTRGETQALVVATLGSLK
DSQIIDALQGEYHDRYMFHYNFPPYSTGETGRVGSPKRREIGHGRLAKRALVAVLPSEAE
FGYAMRVVSEITESNGSSSMASVCGGCLSLMDAGVPMKAHVAGVAMGLIKEGSKFAVLTD
ILGDEDHLGDMDFKVAGTEVGITALQMDIKITGITKEIMDVALKQAREGRMHILGLMKQA
VPTARSELSQFAPRIIKIKIHPDKIREVIGKGGSVIQAITRETGTEIDIQDDGTISIACL
SGEAGEAAKQRIEAIAAEIEVGRIYEGPVVRLLDFGAIVQLLPGKDGLLHISQIAHERVN
AVADHLKEGQIVKVKVMEADDKGRVRLSMKALIEPPAKASRSEQAAEVPVGDAPAQ
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atgaaagccataaagaaaacactgcaatacgggcgccacacgctcaccatcgaaacgggt
gaaattgcgcggcaggccgacggtgcagtccttgtgtcacttgacgatacggttgtattg
gtcacttgcgtggcgcgcagggatgcaaaggaagggcaggacttttttccgctgacggtt
gattaccaagagaaaacatttgcagccggcaaaatcccgggcggctttttcaagcgtgaa
ggccgtccttcagagaaggaaattttgaccagtcgcttgattgaccgaccacttcgaccg
ctgttcccggatggtttctacaacgaagtccagatcattgccaccgtcctttcgattgat
cctgaaatcgactcagatattccggcgatgataggcgcatctgctgccgtgacccttgca
ggcgtaccgtttgaggggccgattggcgcggcgcgtgtcggttatatcgacggccagtac
attctgaaccccacaaaaaccgagctcgaaacgtctaagctgaatttgattgttgcgggg
accaattctgctgtgttgatggtcgaatcagaagcaatggaactgccggaagacgtcatg
ctgggttcagtggtgtttgggcatgagcagcagcaagccgtcatcaatgccattctagat
ttggctgatgaagcgggtaaagattcatgggcttggacgccgccagcgccgccgcaagca
ttgattgaccagattaatgccatggcggccaacgacctgaatgatgcgttccgcatcaaa
tcaaaaggcgcccgctcggaaaagctatcggagattaacaagcgcgtcattgcgacactg
tgcaccggcgaagaaggtgcgcctgataagaacacggtatcttcattgctgttcgcgatt
gagtcaaaaattgttcgcggacaaattctcaacggcgaaccgcgcatcgatggtcgcgat
acgcgcactgttcgcccgatttcgatccgcacctcagttctgccgcggacccacggctcg
gtactgttcacccgtggcgaaacacaagcgctagtcgtcgcaacgctcgggtcgttgaag
gattcacagattattgatgccttgcagggggagtatcacgaccgctacatgttccattac
aacttcccgccctattcgacaggagagactggacgtgtgggttcgccaaagcgtcgcgaa
attggacacgggcgcttggccaagcgtgcgctcgtcgcagtactaccgagcgaagcggag
ttcggctacgcgatgcgcgttgtatcggagattaccgagtcgaatggctcgtcttcgatg
gcctcggtctgcggcggatgcttgtcgctgatggacgcaggtgtgccgatgaaagcgcac
gttgcaggcgttgcgatggggctgattaaagaaggaagcaagtttgcggtgttgaccgat
attctgggggatgaagatcaccttggcgacatggacttcaaggtcgctggtacggaagtt
ggcattacggcgctgcaaatggatattaagatcaccggtatcaccaaggagatcatggat
gttgcattgaagcaggcgcgcgaagggcgcatgcatatcttggggttgatgaagcaagcg
gtgccaactgcgcgctccgagctttcgcaattcgcgccgcgcattatcaaaattaagatt
catccggacaaaatccgtgaagttatcggcaaaggcggctccgttattcaagcgatcact
cgcgaaaccggtaccgagatcgatatacaagacgacggcacaatttctatcgcttgcctc
tccggtgaagctggcgaagcggccaaacagcgtattgaggcaatcgcggcagaaattgaa
gttggccgtatttacgaaggcccggtcgtacgcctgctggacttcggtgccatcgttcaa
ctcctgcccggtaaagatggtctgctacacatctcgcagattgcccatgagcgagtaaat
gccgtggctgatcacctgaaagaaggccagatcgtcaaagtgaaggttatggaagcagac
gataagggtcgtgtacgcttgtcgatgaaggcgctgattgagccgccagcgaaggcgtcc
cgatcagagcaagcggccgaagtgccggtgggcgacgcgccagcgcagtaa
DBGET
integrated database retrieval system
