Betaproteobacteria bacterium GR16-43: BWI17_09560
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Entry
BWI17_09560 CDS
T04726
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
beba
Betaproteobacteria bacterium GR16-43
Brite
KEGG Orthology (KO) [BR:
beba00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
beba03019
]
BWI17_09560
Enzymes [BR:
beba01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BWI17_09560
Messenger RNA biogenesis [BR:
beba03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
BWI17_09560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
AAA_23
SRP54
nSTAND3
T2SSE
NACHT
AAA_30
FtsK_SpoIIIE
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
APV49908
UniProt:
A0A1P8FIQ9
LinkDB
All DBs
Position
1908496..1912371
Genome browser
AA seq
1291 aa
AA seq
DB search
MNDLPADLFAGTLAADHPKIAALAAQVRERERRDHPVGRERALLGELLERSRARHAARLA
ALPRPSFPEDLPIAQKRDDIAALIGKHPVVIVCGETGSGKTTQIPKICLALKRGAAGLIG
CTQPRRIAARSLSKRLAVELPGSPKGFVGHKIRFQDETRPESVIKVMTDGILLAEIHSDR
ELRAYDTIIVDEAHERSLNIDFLLGYLKRLVAIRSDLKVIVTSATIDTQRFSEFFGGAPV
IEVSGRTYPVEVRYRPEFFEVEQEDDEPVDLNEALVKAVDEIHRTSRTGDVLVFLPGERE
IREAAEHLRKHGPKGLEILPLFSRLSAEEQDRVFEPSGQRRVVLSTNVAETSLTVPGIHY
VIDAGLARVKRYSPRQKIDQLRIEPISQAAAKQRAGRCGRVASGIAIRLYAEADFLERPT
FTTPEILRTSLASVILRMASLDVGEIAAFPFVEPPTPRQIQDGYQVLLELGAIDEKRRLT
PIGQELARLPVDPRIGRMLIGAREFHCGTEMIILAAALSIQDPRDRPQDKRQESDRAHEE
FRDDASDFVQLMNLWKFFDEAFVHKKSTRKLYDTCREHFLSYVRMREWRDLAGQLREMAS
ELRIRENPTPATYEQVHRALLTGLVTNVGLKAQDGDHYNAPRGIPFAVWPGSGLKKNRPR
WIVAGELQETTRIYARNVARVEPDWIEKAAAHLVTRQHAEPHWDRERGEVLAYESVSLYG
LSIVARRKVSFGKLDPPKAREVFIAGALVDGEFDTPLAFFAANRRLVKEVEELEHRARRP
DVLVDDSVIQAWYHARIPDDVRDARSFDAWYREAAKATPNLLFLTREELMRHGAESVTEQ
LFPREMKIGEATFPLAYRFEPAHPLDGVTMTVPLALLNQVEDAAVDWLVPGLVRDKVAWL
MKALPKRVRTQLVPVPEHVTAFLQQERIGARPVREAVLAYASRRCGERLDDAIWSKDDMP
LHFAMNLRVIDDAKRELAMSRDLGELRKRLGEAASLTLAKSKPGMEREGIKAWDFGDLPE
EVSFRRGNQSLTGYPALVDEGESVSIRLFDAREKAAEAHRAGVKRLLSFELREQLKNLDR
SIASQNALALRYVPAISADKVKEDLAAAIVDRAFFGEDALPRTAKAFEEQKKRAKARLPA
VSEAVSRHAAAIATAYQEASTTIAQSGALGRVAQEARAQRDRLVSPGFLSRTPWERLEHL
PRYLRGYALRLQKYRTNAERDNKHNGTVAGLWNQYEARAATDRDAERHDPKLEDFRWMIE
ELRISLFAQELRTPMPVSAKRLQKYWDEHLR
NT seq
3876 nt
NT seq
+upstream
nt +downstream
nt
atgaacgacctcccagcagaccttttcgccggcacgctcgccgccgaccacccgaagatc
gccgcgctcgccgcgcaagtccgcgagcgggagcggcgcgatcatcccgtggggcgcgag
cgagcactgctgggcgagctgctcgagcggtcgcgcgctcgccatgcggcgcggctggcg
gcgctgccgcggcccagctttcccgaggacctgccgatcgcgcagaagcgcgacgacatc
gccgcattgatcgggaagcatcccgtcgtgatcgtctgcggcgagacgggctcgggcaag
accacgcagatcccgaagatctgcctcgcgttgaagcgcggcgccgcgggcctcatcggg
tgcacgcagccgcggcgcatcgcggcgcgcagcctctcgaagcgcctcgcggtcgagctg
cccggaagcccgaagggattcgtgggccacaagatccgcttccaggacgagacgcgtccc
gagtcggtcatcaaggtgatgaccgacggcatcctgctggccgagatccactccgaccgc
gagctgcgcgcctacgacacgatcatcgtcgacgaggcgcacgagcgcagcctcaacatc
gatttcctgctcgggtacctgaagcgcctggtcgcgatccgctccgacctcaaggtaatc
gtgacctcggccaccatcgatacgcaacgcttctcggagttcttcggcggcgccccggtg
atcgaggtgagcgggcgcacctatccggtcgaggtgcgctaccgccccgagttcttcgag
gtcgagcaggaggacgacgaaccggtcgatctcaacgaggcgctggtgaaggccgtcgac
gagatccaccgcaccagccgcaccggcgacgtgctggtcttcctccccggcgagcgcgag
atccgcgaagccgccgagcacctgcgcaagcacgggccgaagggcctcgagatcctgccg
ctgttctcgcgcctctccgccgaagagcaggaccgtgtgttcgagcccagcgggcagcgc
cgggtcgtgctctcgaccaacgtcgccgagacttcgctcacggtgcccggcatccactac
gtcatcgacgcgggcctcgcgcgcgtgaagcgctattcgccgcggcagaagatcgaccag
ttgcgcatcgaaccgatctcgcaggcggcggcgaagcagcgcgcgggccgctgcggtcgc
gtggcgagcggcatcgcgatccggctctacgccgaggcggacttcctcgagcgcccgacg
ttcacgacgcccgagatcctgcgaacctcgctcgcatccgtgatcctgcgcatggcctcg
ctcgacgtgggcgagatcgcggccttcccgttcgtcgagccgccgacgccgcgccagatc
caggacggctaccaggtgctcctcgagctgggcgcgatcgacgagaagcgaaggctcacg
cccatcggccaggagctcgcacgcttgccggtcgacccccgcatcggccgcatgctgatc
ggcgcgcgcgaattccattgcggcaccgagatgatcatcctcgccgcggcgctctcgatc
caggacccgcgcgaccgtccgcaggacaagcgccaggaatccgaccgcgcgcacgaagag
ttccgcgacgacgcctcggatttcgtgcaactcatgaacctgtggaagttcttcgacgaa
gcgttcgtccacaagaaatcgacgcgcaagctctacgacacgtgccgcgagcacttcctc
tcgtacgtgcgcatgcgcgagtggcgcgacctcgccgggcagctgcgcgagatggcctcc
gaacttcgcattcgcgagaaccccacgccggccacgtacgagcaggtgcaccgcgcgctg
ctgaccggcctcgtgaccaacgtgggcctgaaggcgcaggacggagaccactacaacgca
ccgcgcggcatccccttcgccgtctggccgggctcggggctgaagaagaaccgcccgcgc
tggatcgtggcgggagagctgcaggagaccacgcgcatctatgcccgcaacgtcgcgcgc
gtggagcccgactggatcgagaaggccgcggcccacctggtcacgcgccagcacgcggag
ccgcactgggaccgcgaacgcggcgaggtgctggcgtacgaatcggtttcgctctacggc
ctctcgatcgtcgcgcgacgcaaggtgagcttcggcaagctcgatcccccgaaagcgcgc
gaagtgttcatcgccggtgcgctcgtggacggcgagttcgacacgccgctcgcctttttc
gcggccaatcgccggctggtgaaggaagtcgaggagctggagcaccgtgcgcgccgcccg
gacgtgctcgtggacgattcggtgatccaggcctggtaccacgcgcgtattcccgacgat
gtgcgcgacgcgaggtcgttcgacgcgtggtatcgcgaggcggcgaaggccacgccgaac
ctgctcttcctcacccgcgaagagctcatgcgccacggcgccgagtccgtcacggaacag
ctcttcccgcgcgagatgaagatcggcgaggccacgttcccgctcgcgtatcgcttcgag
cccgcgcatccgctggacggcgtcacgatgaccgtgccgctcgcgttgctcaatcaagtc
gaggacgccgcggtggactggctggtgccggggctcgtgcgcgacaaggtggcctggctg
atgaaggcgctgcccaagcgcgtgcgcacgcaactcgtccccgtgcccgagcacgtgacc
gcgttcctgcagcaggagcggatcggcgcgcgcccggtgcgcgaagccgtgctggcctat
gcctcgcgccgctgcggcgagcgcctggacgacgcgatctggtcgaaggacgacatgccg
ctgcacttcgcgatgaaccttcgcgtcatcgacgatgcgaagcgcgagctcgcgatgagc
cgcgacctgggcgagctgcgcaagcgcctgggggaagcggcgagcctcacgctcgcgaag
tcgaagccgggcatggagcgcgaaggcatcaaggcctgggatttcggcgacctccccgag
gaagtgagctttcgccgcggcaaccagtcgctcacgggctatcccgcgctggtcgacgag
ggcgagagcgtctcgatccgcctgttcgatgcacgcgagaaagccgccgaggcccatcgc
gcgggcgtgaagcgcctcctgtcgttcgagttgcgcgaacaactgaagaacctcgaccgc
agcatcgcgagccagaacgcgctcgcgttgcgctacgtgccggctatttccgcggacaag
gtgaaggaagacctcgccgcggccatcgtcgatcgcgcgttcttcggcgaagacgcgttg
ccgcgcacggccaaggctttcgaggagcagaagaagcgcgcgaaggcccggctgcccgcg
gtgtcggaagcggtgtcgcgccatgcggccgcgatcgcgacggcctaccaggaagcctcg
acgacgatcgcgcaatcgggcgcgctcggccgcgtggcgcaggaggcgcgagcgcagcgc
gaccggctggtgagcccgggtttcctctcgcgcacgccgtgggagcgcctcgagcacctg
ccgcgctacttgcggggctacgcgttgcgcctccagaagtaccgcaccaacgccgagcgc
gacaacaagcacaacggaacggtggccggtttgtggaaccaatacgaagcgcgcgccgcc
accgatcgcgatgccgaacgccacgatccgaagctcgaggatttccgctggatgatcgag
gagctgcgcatttccctcttcgcccaggaactgcgcacgcccatgccggtgtcagccaag
cgcctgcagaagtactgggacgagcatttgagataa
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