Blochmannia endosymbiont of Colobopsis nipponica: GN160_01665
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Entry
GN160_01665 CDS
T07558
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
3.6.4.13
]
Organism
bec
Blochmannia endosymbiont of Colobopsis nipponica
Pathway
bec03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bec00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GN160_01665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bec03019
]
GN160_01665
03009 Ribosome biogenesis [BR:
bec03009
]
GN160_01665
Enzymes [BR:
bec01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.4 Acting on acid anhydrides to facilitate cellular and subcellular movement
3.6.4.13 RNA helicase
GN160_01665
Messenger RNA biogenesis [BR:
bec03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GN160_01665
Ribosome biogenesis [BR:
bec03009
]
Prokaryotic type
rRNA helicases
GN160_01665
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
TrkA_N
Motif
Other DBs
NCBI-ProteinID:
QOI11297
LinkDB
All DBs
Position
complement(363172..364875)
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AA seq
567 aa
AA seq
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MLIKNSSFINLGLNSFIINALKDLGYKEPSPIQAKCIPHLLAGLDVLGMAQTGSGKTAAF
VLPLLQNVDSKLMATQVLVLTPTRELAIQISTVCSSLAKYLPDIYIVPIYGGQRYDIQFR
ALNKGAHIIVGTPGRLLDHLGRGTLDLTKLHSLVLDEADEMLRMGFIDDVESILLKIPVK
HQTALFSATLPSAIRRIVHRFMKNPKEIFIHSGTSACSDIKQYYCLMYGIHKSEALMRFI
EIENFDAVIVFVRTKSSSVEVTEILEKNGYNSAALNGDMSQTLRQQTLNRFKSGKFDILI
ATDIAARGLDVDRVSLVINYDVPLDAESYVHRIGRTGRAGRVGQSLLFVGRSEYKLLRNI
ERVINSVITEISLPSFDVLIARRLEKFSAQLELQLKHNDLDIYLKLLAKIRSKIDYLDTE
RLAAILLRMVQGSKRLASYFNPSVKHFVSTRNRSKRDVHGRNFAYCEKKGTLSNIYNKYQ
FGEMGLYRIELGRNHGIKISHIVGAINNNKGNINCCIGAIRLFASYSTIELPKIVSPKIL
SVFNRIRILNKPINIQFIGNVFRNSNI
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atgttaataaaaaatagttcttttattaatttaggtttaaatagtttcattatcaatgct
ttgaaagatcttggttataaagaaccttctccaattcaagctaaatgtattccgcattta
ttagctggtcttgatgttctgggtatggcacaaacgggtagcggtaaaactgcagcgttt
gttttgccattattacagaatgtggattctaaattgatggccacacaagtattagttttg
actccgactcgtgaattagctattcaaattagtacagtatgttctagtttagcaaaatat
cttcctgatatctatattgttccaatatatggcggtcagcgttatgatatacaatttcgt
gctttaaataaaggggctcatattatagtaggtactcctggtaggttgttggatcattta
ggtcgtggcacattagatttaactaaattgcatagtttagtattagatgaagctgatgaa
atgttacgtatgggttttattgatgatgttgaaagtattttgttaaaaattcctgtcaag
catcaaactgctttgttttctgctacgttaccgtcagctattaggcgtattgttcatcgt
tttatgaagaatcctaaagaaatttttattcattctggaactagtgcttgttcagatatt
aagcaatattattgtttaatgtatggcatccataaaagtgaagctttaatgcgttttata
gaaattgaaaattttgatgctgttattgtttttgtacgcactaaaagttctagtgttgaa
gttactgaaatattagaaaaaaatggttataatagtgctgcattaaatggtgatatgtct
caaactttgcgtcaacagacattaaatagatttaaaagtggtaaatttgatattcttatt
gccacagatattgctgctcgtggattagatgtagatcgtgttagtttggttattaattat
gatgttcctttggatgctgaatcttatgtacatcgtattggacgtactgggcgtgctggt
cgggttggtcagtcgttgttgtttgtaggacgttctgaatataagttattgcgtaatatt
gaaagagtgattaattccgttattactgaaatttctttaccgtcgtttgatgttttaatt
gctcgtagattagaaaagttttctgcgcaactagagcttcagttgaaacataatgatttg
gatatttatcttaaattattagctaaaataaggtctaaaattgattatttagatacagag
agacttgctgctattttattaagaatggtgcaaggtagtaaaagattggcttcatatttt
aacccttcggtgaagcattttgtttcaactcgcaataggagtaagagagatgttcatggt
agaaattttgcgtattgcgaaaaaaaaggcactttatctaatatatataataaatatcaa
tttggtgaaatgggactttatcgcattgagttaggccgtaatcatggcatcaaaataagt
catattgttggagcaattaataataacaaaggaaatattaattgttgtataggagcaatt
agattatttgcttcttattccacaattgaattacctaaaattgtatctcctaaaattcta
tcagtatttaatcgtatacgtattttaaataaaccgataaatattcaatttataggcaat
gtttttcgtaattctaatatatag
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