Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri 675: BTURN675_053
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Entry
BTURN675_053 CDS
T03907
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor rpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
bed
Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri 675
Brite
KEGG Orthology (KO) [BR:
bed00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BTURN675_053 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bed03021
]
BTURN675_053 (rpoD)
Transcription machinery [BR:
bed03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BTURN675_053 (rpoD)
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
AKC59646
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All DBs
Position
complement(61953..63809)
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AA seq
618 aa
AA seq
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MEHNQESQLKLLVTRGKEQGYLTFADVNDHLPEEIIDSEQIEDIIQMINDMGIQIMEEAP
NIDDFLLSENTDNSDEDITEATVQALSNVEAEIGRTTDPVRMYMREMGSVELLTREGEID
IAKRIEDGINQVQCSVAEYPEAITYLLEQYERVETGETRLSDLITGFVDPNDDTLEINNN
TIQINITHEIKEILSRTNTISTDEDNDENNNDDDHNIDPEFAHTKFKELQKQYEITKKII
KFNGRNHYQSLQEIFKLSEIFKQFRLAPKQFDYLVNNMRAVMNRVRIQERIIMKLCIEIS
KMPKKKFIDLFSGNESNGIWLNTAIAMNQPWSKKLLDVNKEINHSLHLLHDIEHETGLTI
QQMKNINRRMSIGEAKAKRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKA
VDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQIVQEIG
HEPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGEDEDSHLGDFIEDTSLDLPLDAA
TFDNLRTATHDILSGLTPREEKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL
RKLRHPSRSEVLRSFLED
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atggaacataatcaggaatcacaacttaaactacttgttacacgaggaaaagaacaagga
tatttaacatttgctgatgttaacgatcatttaccagaagaaattattgattctgaacaa
atagaagacatcattcaaatgattaatgacatgggtatacaaatcatggaagaagcacca
aatatcgatgacttcttactctcagaaaatactgataatagtgatgaagacataacagaa
gctactgtacaagctctatccaacgtagaagcagaaataggacgaacaactgatccagta
agaatgtacatgcgcgaaatgggaagtgtagaattactaaccagagaaggagaaatagac
attgcaaaacgtatcgaagatggaattaatcaagttcaatgctcggtagctgaataccca
gaagcaattacttatttactagaacagtacgaacgtgtagaaactggagaaacacgacta
tcagacctaatcactggatttgttgaccccaacgatgatacattagaaatcaacaacaac
acaatacaaataaacattactcatgaaataaaggaaattttatcacgaacaaatacaata
tcaacagatgaagataacgatgaaaacaataacgatgatgatcacaatatagatcctgaa
tttgctcatacaaaattcaaagaactacaaaaacaatatgagataactaaaaaaattatt
aaatttaatggtcgtaaccattatcaatcattacaagaaatatttaaactatctgaaata
ttcaaacaatttcggctggcaccaaaacaatttgactacctagtcaacaatatgcgagca
gtcatgaatcgtgttcgcattcaagaacgaataattatgaaattgtgtattgaaatcagt
aaaatgccaaaaaaaaaattcattgatttattttccggaaatgaaagcaacggtatttgg
ctaaataccgcaatagctatgaaccaaccatggtcaaaaaaattacttgatgtcaataaa
gaaatcaatcatagtttacatttattacatgacattgaacacgaaaccggactcacaatc
caacaaatgaaaaatataaatcgacgaatgtcgataggcgaagctaaagctaaaagagct
aaaaaagaaatggtggaagctaatcttcgtttagttatatcgattgctaaaaaatatact
aatcgcggattacaatttttagatttaattcaagaaggcaacattggactcatgaaagct
gttgacaaatttgaatatcgacgagggtacaaattttctacatatgccacttggtggatt
agacaagcaattactcgatcgatcgccgaccaagcaagaacaattcgaataccggtacat
atgattgaaactattaacaaactcaaccgaatttctcgtcaaatagtgcaagaaattgga
catgaaccaacaccagaagagttagcagaacgaatgttaatgccagaagacaaaatcaga
aaagtattaaagattgctaaagaaccaatttcaatggaaacacctattggtgaagatgaa
gattctcatttaggagattttattgaagatacttcattagatttaccgttagacgcagct
acatttgataatttacgtactgctactcacgatatactatccggattaaccccacgagaa
gaaaaagtattacgaatgagattcggaattgatatgaacacagaccacaccctagaagaa
gtgggaaaacagtttgacgtaactagagagcgtattcgacaaattgaagctaaagcactg
agaaagttacggcatccaagtcgatcagaagtattacgaagctttctagaagattaa
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