Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri 675: BTURN675_105
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Entry
BTURN675_105 CDS
T03907
Symbol
deaD
Name
(GenBank) Cold-shock DEAD box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bed
Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri 675
Pathway
bed03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bed00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BTURN675_105 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bed03019
]
BTURN675_105 (deaD)
03009 Ribosome biogenesis [BR:
bed03009
]
BTURN675_105 (deaD)
Enzymes [BR:
bed01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BTURN675_105 (deaD)
Messenger RNA biogenesis [BR:
bed03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BTURN675_105 (deaD)
Ribosome biogenesis [BR:
bed03009
]
Prokaryotic type
rRNA helicases
BTURN675_105 (deaD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
TadF
HEM4
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AKC59694
UniProt:
A0A0E3Y811
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All DBs
Position
126249..127964
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AA seq
571 aa
AA seq
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MSKLELSFFDLGLNKNILKALSDLGYVKPFFIQEKCIPYLLNGHDVLGLAQTGSGKTAAF
ILPLLQNINPTLCFPQVLILAPTRELSMQLRDVCLNFSKYIQGVNVVSLHGGQSYNIQFR
SLKKGPQIVVGTPGRLLDHLNRATLTLLKLHSVVIDEADEMLRMGFIEDVRSIIFKAPKN
RQTALFSATFPKEIRSIARQFMNHPKEIYLDNEKISTTIKQDYWVVSGGFHKNDALVRFL
EVEIFDAAIVFVRTKGATIEVSDMLEKNGYNSAALNGDMNQVMRQQTLERLKSGQLDILI
ATDVAARGLDVDRVTLVINYDAPVNFLSYIHRIGRTGRAGRIGRSLLFIRHSEYRLLRYI
KKSVNLNISKVQIPSLLVLINSRLTKFSAQVEHVLANSTDLDKYRVLLYKIKPQNNFDME
TLAAILLKMAQGGRSLVLSADQGQQHIESEFKNNSKIHHGRFSLTGPRGSNKECSSLSRR
STSRNRSMDLYRIDLGRDDGLSVRHIVGAIANECDISSRHIGHIRMFSSYSIVELSKGIP
SSTLLHFSKVRVLNKTMNIKLLERVDKDICV
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagcttgagctttctttttttgatttaggattaaataaaaatattttgaaagct
ttatcagatcttgggtatgtaaagccttttttcattcaggagaaatgtattccttatttg
ttaaatggtcatgatgttttgggtttagcacaaacgggtagtggtaaaacggcagctttt
attctgccgttgttgcagaatattaatcctactttgtgtttcccacaagtgttaattttg
gcaccgactcgtgagttatctatgcaacttagggatgtttgtttgaatttttcaaaatat
attcagggtgttaatgtggtatctttgcatggtggtcagagttataatatacaatttcgt
tctctaaaaaaagggcctcaaattgtggttggtactcctggtagattgttagatcattta
aatcgggccactttaacattattaaaattacatagtgtagtaatagatgaagctgatgaa
atgttacgaatgggttttatagaagatgttcgatccattatatttaaagcacctaaaaat
cgtcaaactgctttattttctgcaacatttccaaaagaaattcgttctattgcacgtcag
ttcatgaatcatcctaaagaaatatatttagataacgaaaaaatatctactactataaaa
caagattattgggttgtgtctggtggttttcataaaaatgatgctttagttcgttttctt
gaagtggaaatatttgatgccgcaattgtttttgttcgtactaaaggtgccacgatagaa
gtttctgatatgttggaaaaaaatggttataacagtgcggctttaaatggcgatatgaat
caagttatgaggcaacagacgttagagcgcttaaaatcaggtcaattagatattcttata
gctactgatgttgcagcacgaggattagatgtagatcgtgttacattagtcattaattac
gatgcccctgtgaattttttatcttacatacatcgaatcggacgtactggtcgtgcaggt
cgtataggtagatcattattgtttataagacattcagaatatcgtttattaaggtatatt
aagaaaagtgtgaatttaaatatatctaaagtgcaaattccatctttgcttgtattaatt
aatagtcgattaactaaattttctgcacaagttgagcatgtgttggcaaatagtactgat
ttggataagtatcgtgttttgttatataaaattaaaccccaaaataattttgatatggag
actcttgcagcaatattattaaaaatggcacaaggcggcaggtcattagtattatctgca
gatcagggacaacaacatattgagtccgagtttaaaaataatagtaaaattcatcatggt
cggttttcattgactggtcctagaggttcaaataaagaatgttcttctttgagtcgtaga
agtacgtcgcgaaataggagcatggacctttaccgcattgatcttggcagagatgatggg
cttagtgttcgtcatattgttggggctattgctaacgaatgtgatattagtagtcgacac
atagggcatattagaatgttttcatcttattctattgttgagttatctaagggtattcca
agtagtacattattgcattttagtaaagttcgtgtattaaataaaactatgaatattaaa
ttgttagaaagagtagataaagatatatgtgtttaa
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