Bacteroides eggerthii: INE88_00217
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Entry
INE88_00217 CDS
T07755
Name
(GenBank) Rho termination factor, RNA-binding domain
KO
K03628
transcription termination factor Rho
Organism
beg
Bacteroides eggerthii
Pathway
beg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
beg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
INE88_00217
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
beg03021
]
INE88_00217
03019 Messenger RNA biogenesis [BR:
beg03019
]
INE88_00217
Transcription machinery [BR:
beg03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
INE88_00217
Messenger RNA biogenesis [BR:
beg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
INE88_00217
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA
AAA_25
NACHT
OB_RNB
Mor
Motif
Other DBs
NCBI-ProteinID:
QUT43437
UniProt:
A0A380YIY2
LinkDB
All DBs
Position
218853..220853
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AA seq
666 aa
AA seq
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MYNIIQLNDKNLSELQAIAQELGIKKTDSLKKEELVYKILDEQAIAGATKKVAADKLKEE
RKGDKQKRSRVTVKKEGTDKVFTANKNGELTKGKTGETPATQTSAQTVETAKETAASSTP
ATETEAPKRKPGRPRKVKQEAAPVTEVSKTAQTETKAEVAEPQKAEIKKAEPKVTPAAPQ
PTPDETPVLPEVEDDFIPIEDLPTEKIELPSELIGKFEATKAETPVPVAEQPQQQRPRLR
LRDNNTPYNNNRNNNNSQRPAQQQRPAQQQNSNDNNYAAPERKPVAEREKAYEFDDILTG
TGVLEIMQDGYGFLRSSDYNYLSSPDDIYVSQSQIKLFGLKTGDVVEGVIRPPKEGEKYF
PLVKVSKINGRDPAFVRDRVPFEHLTPLFPDEKFRLCKGGYSDSMSARVVDLFAPIGKGQ
RALIVAQPKTGKTILMKDIANAIAANHPEVYMIMLLIDERPEEVTDMARTVNAEVIASTF
DEPAERHVKIAGIVLEKAKRMVECGHDVVIFLDSITRLARAYNTVSPASGKVLSGGVDAN
ALHKPKRFFGAARNIEGGGSLTILATALIDTGSKMDEVIFEEFKGTGNMELQLDRNLSNK
RIFPAVNIVASSTRRDDLLQDKQTLDRMWILRKYLADMNPIEAMDFVKDRMEKTKDNDEF
LMSMNS
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atgtataatatcattcaattaaacgacaaaaatttgtcggaattgcaagctattgcccaa
gagcttggtatcaaaaaaacagattctctcaagaaagaagaacttgtctacaagatcctt
gacgagcaagctattgcaggagcaaccaagaaagtagctgccgacaaattaaaagaagaa
cgtaagggggacaaacaaaaacgttctcgcgtaacagttaagaaagaaggaacggacaag
gtgttcacagccaataaaaacggcgagcttacaaaaggaaaaacaggagaaacacctgcc
acacaaacttctgcacaaacagtagagacagctaaagagacggctgcttcctcaactccc
gcaacagagaccgaagctcccaaacgcaaaccgggacgtcctcgtaaagtaaagcaagaa
gcggcccccgtaactgaagtatccaagactgcccagacggaaactaaagcagaagttgca
gaaccccaaaaagcggaaataaagaaagccgaaccgaaagtaaccccagctgctccacaa
ccgacaccagatgaaacgcccgttttaccggaagtagaggacgatttcatccccatcgag
gatctgcctaccgaaaaaatagaattaccatcggaactcatcggcaagtttgaggccacc
aaagcagaaactcccgttcccgtagcagagcaaccgcaacaacagcgcccccgtcttcgt
ctccgcgacaacaacactccatacaataacaatcgtaacaataacaacagccaacgtcct
gcacagcagcagcgtcccgcacaacagcagaacagtaatgacaacaattatgctgctccg
gaacgcaagccggtagcagaacgtgaaaaggcatatgaattcgacgatatacttaccgga
accggcgtattggaaatcatgcaggacggttatggttttttgcgctcatccgattataac
tacctttcttctcctgacgacatctatgtttcacaatcacaaatcaagctgttcggctta
aagaccggtgatgtagtggaaggtgtgatccgtcctccaaaggaaggtgaaaaatatttc
ccgctggtaaaagtgtccaagattaacgggcgcgatccggctttcgtgcgcgaccgcgta
ccgtttgaacatctcaccccacttttccctgacgaaaagttcagactttgcaaaggtgga
tattccgattccatgtcggcccgcgtagtagacctttttgcccctatcggtaaagggcag
cgtgcattaatcgtagcccagcccaaaaccggtaagactatcttaatgaaagatattgcc
aacgcaattgcagccaaccatcccgaagtttacatgattatgctgctgattgacgaacgt
ccggaagaagttaccgacatggcacgtaccgtaaatgcagaagttatcgcttccactttc
gacgaacctgcagaacgtcacgtaaaaatagcaggcatcgttttggaaaaagccaaaaga
atggtagaatgtggacatgacgttgttatcttccttgactccattacacgtctggcacga
gcttacaacactgtttctcccgcctccggtaaagtcctctccggtggtgtagacgctaat
gcgctgcacaaaccgaaacgtttcttcggtgctgcccgcaacattgaaggaggaggttcg
ctgactattcttgcaacagcgctaattgataccggttccaaaatggatgaagtcatcttt
gaagagttcaaaggtacgggtaacatggaattacaactcgaccgcaacctgtctaacaag
cgtatcttcccggcagtcaacatcgttgcctccagcacccgccgcgacgacctgctgcaa
gacaaacaaacgctggatcgcatgtggattctccgtaagtaccttgccgacatgaacccg
atagaggcaatggacttcgtaaaagaccgcatggaaaagaccaaggacaatgacgagttc
ttgatgagtatgaacagttaa
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