Bacteroides eggerthii: INE88_02054
Help
Entry
INE88_02054 CDS
T07755
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
beg
Bacteroides eggerthii
Pathway
beg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
beg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
INE88_02054 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
beg03021
]
INE88_02054 (rpoC)
03400 DNA repair and recombination proteins [BR:
beg03400
]
INE88_02054 (rpoC)
Enzymes [BR:
beg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
INE88_02054 (rpoC)
Transcription machinery [BR:
beg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
INE88_02054 (rpoC)
DNA repair and recombination proteins [BR:
beg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
INE88_02054 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Biotin_lipoyl_2
Peptidase_M23
Cohesin
Motif
Other DBs
NCBI-ProteinID:
QUT45239
UniProt:
A0A380Z8B3
LinkDB
All DBs
Position
2433734..2438029
Genome browser
AA seq
1431 aa
AA seq
DB search
MAFRKDNKIKSNFSKISIGLASPEEILENSSGEVLKPETINYRTYKPERDGLFCERIFGP
IKDYECHCGKYKRIRYKGIVCDRCGVEVTEKKVRRERMGHIQLVVPVAHIWYFRSLPNKI
GYLLGLPTKKLDAIIYYERYVVIQPGILEGEVAQFDLLEEGEYLDLLEKLPSDNQYLEDS
DPNKFVAKMGAEAIYDLLSRIDLDSLSYELRNRAGSDASQQRKTEALKRLQVVESFRASR
GRNKPEWMIVRIVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIEIKAPE
VILRNEKRMLQESVDSLFDNSRKSSAVKTDANRPLKSLSDSLKGKQGRFRQNLLGKRVDY
SARSVIVVGPELKMGECGIPKLMAAELYKPFIIRKLIERGIVKTVKSAKKIVDRKEPVIW
DILEHVMKGHPVLLNRAPTLHRLGIQAFQPKMIEGKAIQLHPLACTAFNADFDGDQMAVH
LPLSNEAILEAQMLMLQSHNILNPANGAPITVPAQDMVLGLYYITKLRKGAKGEGLTFYG
PEEALIAYNEGKCDIHAPISVIVKDVDENGNVVDKMMHDTSVGRVIVNEIVPAKAGYINT
IISKKSLRDIISHVIKVCGVAEAAEFLDGIKNLGYQMAFKGGLSFNLGDIIIPEEKEALV
QRGYEEVEQVINNYNMGFITNNERYNQVIDIWTHVNSELSNILMKTISSDDQGFNSVYMM
LDSGARGSKEQIRQLSGMRGLMAKPQKAGAEGGQIIENPILSNFKEGLSVLEYFISTHGA
RKGLADTALKTADAGYLTRRLVDVSHDVIINEEDCGTLRGLVCTALKNNDETIATLYERI
LGRVSVHDIVHPTTGELLVAGGEEITEAIAQKIEDSPIESVEIRSVLTCESKKGVCAKCY
GRNLATSRMVQKGEAVGVIAAQSIGEPGTQLTLRTFHAGGTAANIAANASIVAKNPSRLE
FEELRTVDIIDEAGEPAKVVVGRLAEVRFVDVNTGIILSTHNVPYGSTLYAADGEVVEKG
KLIARWDPFNAVIITEATGKIEFEGVIENVTYKVESDESTGLREIIIIESKDKTKVPTAH
IMTEDGELIRTYNLPVGGHVVVEDGQKVKAGEVIVKIPRAVGKAGDITGGLPRVTELFEA
RNPSNPAVVSEIDGEVTMGKVKRGNREIIVTSKTGEVKKYLVPLSKQILVQENDYVRAGT
PLSDGATTPADILAIKGPTAVQEYIVNEVQDVYRLQGVKINDKHFEIIVRQMMRKVEIDE
PGDTRFLEQQVVDKLEFMEENDRIWGKKVVVDAGDSQNLQPGQIVTARKLRDENSMLKRR
DLKPVAVRDAVPATSTQILQGITRAALQTSSFMSAASFQETTKVLNEAAINGKVDRLEGM
KENVICGHLIPAGTGQREYEKIIVGSKEEYDRMLANKKTVLDYAVDEKAEE
NT seq
4296 nt
NT seq
+upstream
nt +downstream
nt
atggcttttagaaaagataacaagataaagagtaatttctcgaaaatctctatcggtttg
gcttctcccgaagaaatccttgagaattcgagtggtgaagttttaaagcctgaaaccatc
aactatcgtacgtataagccggagcgtgacggtttgttctgcgagcgcattttcggtcct
atcaaggactacgaatgtcattgcggcaagtacaagcgtatccgttacaaaggcattgtc
tgcgaccgttgtggtgtggaagtgacagaaaagaaagtacgtcgtgagcgtatgggacac
atccagttggttgtgccggtggctcacatctggtatttccgttcgcttcccaataagatc
ggttatttgctgggcctgcccaccaagaaactcgatgccattatctattacgagcgttat
gtagttatccagccgggtatattggaaggcgaggtagcacagttcgacctgctcgaagaa
ggagaatacctggatctgttggaaaagttgccaagcgacaaccagtacctcgaagattca
gaccccaataagttcgttgccaagatgggggcggaggccatttatgacctgctgtcgcgc
atcgacctcgactcattgtcttacgaactgcgtaatcgtgcaggcagcgatgcttcacag
cagcgcaagacggaggcattgaagcgtcttcaggttgttgagtctttccgcgcgtcacgc
ggacgcaacaagcccgaatggatgattgtgcgcattgtgccggttatcccgcctgagctt
cgtccgttggttccgttggacggcggccgtttcgccacttccgacctgaacgacctctac
cgtcgcgtcatcatccgtaacaaccgcttgaagagactgattgagatcaaggctcccgaa
gtgattctgcgtaatgagaagcgtatgttgcaggaatctgtcgactcattgttcgacaac
tcccgtaagtcgagcgcagtgaagactgacgccaaccgtcctttgaagtcactttcggac
agtctgaaaggtaagcagggacgtttccgtcagaatttgctgggtaagcgtgtcgactat
tccgcacgttccgtaatcgttgtgggtccggagttgaagatgggcgagtgcggtattcct
aaactcatggcagccgagctctacaagccgttcatcatccgtaagctcatcgagcgcggc
atcgtgaagacggtgaagagtgccaagaagattgtggaccgtaaggaacctgtcatctgg
gacattctggaacacgtaatgaagggacatccggtgttgctgaaccgcgccccgacgctt
caccgtctgggtatccaggcgttccagccgaagatgatcgaaggcaaggcaatccagctc
cacccgttggcatgtacggcattcaacgccgacttcgacggtgaccagatggccgttcac
ttgcctttgagcaatgaagccattctggaggcacagatgctgatgctccagtcgcataac
atcttgaaccctgccaacggtgcgcctattacggtgcctgcacaggacatggtactcggt
ttgtactacatcaccaagctgcgcaagggagccaaaggcgaaggccttactttctacggt
cccgaagaggcgcttattgcctacaacgaaggcaagtgcgacattcacgcgcctatcagc
gtcatcgtgaaggacgttgacgaaaacggcaacgtggtggacaagatgatgcacgacact
tcggtgggacgtgtcattgtaaacgaaattgttcctgccaaagcaggttacatcaatacg
attatctccaagaaatcacttcgcgacatcatcagccacgtaatcaaggtttgtggtgtg
gcagaagcagccgaattccttgacggaatcaagaacctcggttaccagatggccttcaag
ggcggtctttcgttcaacttgggtgacatcatcatccctgaggagaaggaagcgctggtg
cagagaggttacgaagaggtggagcaggtaatcaacaactataacatgggtttcatcacc
aacaacgagcgttacaaccaggtaatcgacatctggacacacgtaaactccgagttgtcg
aacatcctgatgaaaaccatttcgagcgatgaccaagggttcaactccgtatatatgatg
ttggattccggtgctcgtggttctaaggagcagatccgccagctttcaggtatgcgtggt
ttgatggcgaagcctcagaaggcgggtgccgaaggcggtcagatcatcgagaacccgatt
ctttccaactttaaggaaggtttgtcggtgttggagtacttcatctccacccatggtgcc
cgtaagggtcttgccgataccgctttgaagacggcggatgccggatacctcacccgtcgt
ctggtggacgtgtcgcacgatgtgattatcaatgaagaagactgcggcacactccgcggg
ctggtttgtacggctttgaagaacaacgatgaaaccatcgctacgctgtacgaacgtatc
ctgggacgtgtatccgtacatgatattgttcatcccacaaccggcgagctgcttgttgcg
ggcggtgaggaaatcaccgaagccattgcacagaagattgaggactctccgattgagagt
gttgaaatccgttccgtattgacctgtgaatccaagaagggcgtgtgtgccaaatgttac
ggacgtaaccttgccaccagccgtatggttcagaagggtgaggctgtgggtgtgattgcc
gcgcagtccatcggtgagccgggtacacagttgacgttgcgtacgttccacgccggtggt
acggcagccaacatcgctgccaacgcaagcatcgtggctaagaatccttcccgtctggaa
tttgaggaactccgtacggtagacatcatcgacgaagcgggcgaacctgcgaaggtggtg
gtgggccgtctggcggaagtgcgtttcgtggatgtcaatacgggcatcatactctccacg
cacaacgtgccttacggttccacgctctatgcagccgacggtgaagtggtggaaaaagga
aagctcattgcccgttgggacccgttcaacgcggtcatcatcaccgaagctacgggtaag
attgagtttgaaggcgtcatcgagaacgtcacctataaagtggaatccgacgaatccacc
ggtttgcgcgaaatcatcatcatcgagtccaaggacaagacgaaggtgcctactgcgcat
atcatgaccgaggacggtgagctgatccgtacatacaatctccctgtgggtggtcacgtg
gtagtggaagacggccagaaggtgaaagccggcgaagtaatcgtgaagattccgcgtgcc
gttggtaaggcgggtgatatcaccggtggtttgcctcgtgtcaccgagctgttcgaggcg
cgtaacccgtccaaccctgctgtggtttccgaaattgatggcgaggttacaatgggtaag
gtgaaacgcggtaatcgtgaaatcatcgttacctccaagaccggggaagtgaagaaatac
ctcgtgccgttgtccaagcagatactggtgcaggaaaacgactacgtgcgtgccggtact
ccgttgtccgacggagccactacgcctgccgacatccttgccattaaaggtcctacggcc
gtacaggaatatatcgtgaacgaggtgcaggacgtttaccgcctgcaaggtgtgaagatc
aacgacaagcactttgaaatcatcgttcgccagatgatgcgtaaggttgaaatcgacgag
ccgggcgatacgcgcttccttgagcaacaggtagtggacaagctggagttcatggaagag
aacgaccgcatctggggcaagaaggtggtggtagatgcaggagactcccagaacctgcag
ccgggacagattgtcactgcccgcaagctgcgtgatgagaactccatgctgaagcgccgc
gacttgaaacccgttgcagtgcgtgatgcggttcccgccacttctacgcagattcttcag
ggtatcacccgcgctgctttgcagacttcgagcttcatgtcggccgcttccttccaggag
acgacgaaggtgctcaacgaagctgccatcaacggcaaggtggaccgtctggaaggtatg
aaggagaacgtgatttgcggtcacctgattcctgccggtacaggccagcgcgagtatgaa
aagattattgtcggttcaaaagaagagtacgaccgcatgcttgccaacaagaagacggtg
ctcgactatgctgtcgatgaaaaagcggaagagtaa
DBGET
integrated database retrieval system
