Barrientosiimonas endolithica: GCM100_03120
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Entry
GCM100_03120 CDS
T09132
Name
(GenBank) hypothetical protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bei
Barrientosiimonas endolithica
Pathway
bei03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bei00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
GCM100_03120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bei03400
]
GCM100_03120
Enzymes [BR:
bei01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
GCM100_03120
DNA repair and recombination proteins [BR:
bei03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
GCM100_03120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
RNA_ligase
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
BDZ56655
LinkDB
All DBs
Position
complement(307539..308450)
Genome browser
AA seq
303 aa
AA seq
DB search
MRPMLATPAVGVPVGEQWCHEVKWDGMRVLVDVRGGRVRVWSRTERDVTIAFPELTTDAS
GLTAYDDLLLDGEVVVMRGGIPSFAALAERFNVTNARVAERLSATAPITLMAFDVLRAAS
TDVTGLPLRDRRQLLEGAGLGSPWVQVPPVFDDGEGLSRATAEQGMEGVVSKRWASPYVP
GRRSDDWRKTVHRTTDSFVVGGWKFETDSRDRLGALLIGAPTTSGLQYRGRIGSGLAGRT
GAALLPGCASCPTRATRSSTTCRAPSGPGRRGCVRAWWSTWSSTGSPRSAGFGSRPGRGC
APT
NT seq
912 nt
NT seq
+upstream
nt +downstream
nt
atgcgcccgatgctcgccacccccgccgtgggggttcccgtcggcgagcagtggtgccac
gaggtcaagtgggacggcatgcgcgtgctcgtcgacgtccgcggcggccgcgtgcgggtc
tggtcgcgcaccgagcgcgacgtgacgatcgccttccccgagctcacgaccgacgcgtcg
gggctgacggcgtacgacgacctgctcctcgacggcgaggtcgtggtcatgcgcggtggc
atcccgtcgttcgcggcgctcgccgagcggttcaacgtgaccaatgcccgtgtggcagaa
cgactctcggccaccgcgccgatcaccctgatggcgttcgacgtgctccgcgcggccagc
accgacgtcaccgggctcccgctgcgcgatcggcgtcagctgctcgagggcgccgggctg
ggcagcccgtgggtgcaggtgccacccgtgttcgacgacggcgagggcctctcccgcgcg
accgccgagcaaggcatggagggcgtggtctccaagcgctgggcctcgccgtacgtcccc
ggccggcgcagcgacgactggcgcaagaccgtgcaccgcaccaccgactcgttcgtcgtg
ggcgggtggaagttcgagaccgacagccgagatcgcttgggggcgttgctgatcggggca
ccgacgacgagcggcctgcagtatcggggccgcatcggcagcgggctcgcgggacgcacc
ggtgccgcgctgctccccggctgcgcgagctgcccgacgagggcgacccgttcgtcgacg
acgtgccgcgcgccgagcgggccggggcgacgtgggtgcgtccgagcctggtggtcgacc
tggagttccacgggatctccgaggtcggccggcttcggcagccgacctggaaggggctgc
gccccgacctga
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