Barrientosiimonas endolithica: GCM100_04130
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Entry
GCM100_04130 CDS
T09132
Name
(GenBank) putative DNA helicase
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
bei
Barrientosiimonas endolithica
Pathway
bei03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bei00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
GCM100_04130
09124 Replication and repair
03420 Nucleotide excision repair
GCM100_04130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bei03021
]
GCM100_04130
03400 DNA repair and recombination proteins [BR:
bei03400
]
GCM100_04130
Enzymes [BR:
bei01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GCM100_04130
Transcription machinery [BR:
bei03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
GCM100_04130
DNA repair and recombination proteins [BR:
bei03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
GCM100_04130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
BDZ56756
LinkDB
All DBs
Position
complement(397902..399548)
Genome browser
AA seq
548 aa
AA seq
DB search
MADGPLIVQSDKTILLEVDHEQAEEARRAIAPFAELERAPEHVHTYRVTPLALWNARAAG
HDAEQVVDALIRFSRYPVPQALLIDVAETMDRYGRLRLERDGEQLVLVTTDKPVLEEVLR
HKKIQPLVGQRLDDLTVAVHNSERGAIKQQLIKVGWPADDLAGYVDGEAHQIDLSHDGWE
LRPYQQQAVDGFWHGGSGVVVLPCGAGKTLVGAGAMAEAKATTLILVTNTVSARQWRDEL
LARTTLTEDEIGEYSGSRKEIRPVTIATYQVLTVKRKGIYPHLDLLDARDWGLVVYDEVH
LLPAPIFRMTADLQARRRLGLTATLVREDGRESDVFSLIGPKRYDAPWKDIEAQGYIAPA
DCVEVRVTLSESERMTYATAEPEDRYRLSSCAPVKDGVVERIVEQHRGAPTLVIGQYLDQ
LEGLAERLGADLITGETPVGQRQKLFQAFRDGEISLLVVSKVANFSIDLPEASVAIQVSG
TFGSRQEEAQRLGRVLRPKGDGRTAHFYTVVTRDTVDAEFAAHRQRFLAEQGYAYRIVDA
EDLSEHAD
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
atggccgacgggccactgatcgtccagagcgacaagaccatcctgctggaggtcgaccac
gagcaggccgaggaggcgcggcgcgcgatcgcgccgttcgccgagctcgagcgagccccc
gagcacgtgcacacctatcgggtgacgccgctcgcgctgtggaacgcacgagccgccggg
cacgacgccgagcaggtcgtcgacgcgctcatccggttctcccgctaccccgtgccgcag
gcgctgctgatcgacgtggccgagacgatggaccgctacggccggctgcggctcgagcgc
gacggcgagcagctggtgctggtcaccaccgacaagccggtgctcgaagaagtgttgcgg
cacaagaagatccagcccctcgtggggcagcgactcgacgacctcacggtcgcggtgcac
aactccgagcgcggcgcgatcaagcagcagctcatcaaggtgggctggccggccgacgac
ctcgcgggctacgtcgacggcgaggcgcaccagatcgacctgagccacgacggctgggag
ctgcggccctaccagcagcaagccgtcgacggcttctggcacggcgggtcgggcgtggtc
gtgctgccctgcggcgccggcaagacgctggtgggcgccggggcgatggccgaggccaag
gccaccacgctcatcctggtcaccaacaccgtgagcgcgcggcagtggcgcgacgagctg
ctcgcccgcacgacgctcaccgaggacgagatcggtgagtactccgggtcccgcaaggag
atccggccggtcacgatcgcgacctaccaggtgctgaccgtgaagcggaagggcatctat
ccccacctcgacctgctcgacgcgcgcgactggggcctggtcgtctacgacgaggtgcac
ctgctgcccgccccgatcttccggatgaccgccgacctgcaggcgcggcgccggctcggc
ctgaccgccacgctcgtgcgcgaggacggccgcgagtccgacgtgttcagcctgatcggg
cctaagcgctacgacgccccgtggaaggacatcgaggcgcagggctacatcgcgcccgcc
gactgcgtcgaggtgcgggtgacgctgtcggagtccgagcggatgacgtacgccaccgcc
gagcccgaggaccgctaccggctgtcgtcgtgcgcgccggtcaaggacggcgtggtcgag
cggatcgtcgagcagcaccgcggtgccccgaccctggtgatcgggcagtacctcgaccag
ctcgaggggctcgccgagcggctcggcgccgacctgatcaccggcgagacccccgtcggc
cagcggcagaagctgttccaggcgttccgcgacggcgagatctcgctgctcgtggtgagc
aaggtcgccaacttctcgatcgacctgcccgaggcgtcggtcgcgatccaggtgtcgggc
acgttcggctcgcgccaggaggaggcccagcgcctcggtcgcgtgctgcgcccgaagggc
gacggccgcacggcgcacttctacaccgtcgtcacccgcgacacggtcgacgccgagttc
gccgcgcaccgccagcgcttcctcgccgagcagggctacgcctatcgcatcgtcgatgcc
gaggacctgtccgagcacgccgactag
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