Barrientosiimonas endolithica: GCM100_05970
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Entry
GCM100_05970 CDS
T09132
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bei
Barrientosiimonas endolithica
Pathway
bei03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bei00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GCM100_05970 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bei03021
]
GCM100_05970 (rpoC)
03400 DNA repair and recombination proteins [BR:
bei03400
]
GCM100_05970 (rpoC)
Enzymes [BR:
bei01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GCM100_05970 (rpoC)
Transcription machinery [BR:
bei03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GCM100_05970 (rpoC)
DNA repair and recombination proteins [BR:
bei03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GCM100_05970 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
SLATT_2
Motif
Other DBs
NCBI-ProteinID:
BDZ56940
UniProt:
A0ABN6YLG2
LinkDB
All DBs
Position
574934..578815
Genome browser
AA seq
1293 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRSNVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITSVDEEQRHADLPSLEAQIEVEKKEIENRRDGDVNTRASKLEAD
LAELEKEGAKADARRKVRESAEREMNQIRKRADQQVERLEQVWDRFKNLKVQDLEGDEVL
YREMRDRFGLYFEGGMGAAALQKRLETFDLDAESESLREIIATGKGQKKTRALKRLKVVT
AFQQTKNSPTGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRALKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLDHAQNIKSAKRMVERAR
PVVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLVEGKAVQIHPLVCSAFNADFDGDQ
MAVHVPLSAEAQAEARILMLSSNNILKPSDGRPVTMPTQDMIMGLFHLTSEVEEGQTGRA
FSSVAEARMAYDAGEIQLGTPIKVRIDDFVPSVDAPLPEGAQLGEDGRAVSALVETTLGR
ALFNDTLPEDYAFVNVPVDKKGLSAIVNDLAERYSKVQVAASLDALKEAGFYWATRSGTT
VSIADVVMPDKTEILAGYETKAAKVQQQFDRGLITDDERRQELIEIWTQAANDVSKAMEE
NFPKKNPIYRMVSSGARGNWFQLRQLAGMRGLMANPKGEIIPRPIKANFREGLSVLEFFI
STHGTRKGLADTALRTADSGYLTRRLVDVSQDVIIREDDCGTERGLTLPIAQRNADGELV
EHEDVETSVYARTLASDVEVDGEVLAAAGADLGDVNLDKLVAAGVEEVKVRSVLTCESRV
GTCAKCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGAAGDDITQGLPRV
VELFEARTPKGVAPIAEASGRVQIEETDKARRILLTPDDGSEEHAYPVSKRARMLIEDGQ
HVEVGTLLVQGAIDPKQVLRILGPRAVQKHLVDEVQSVYRQQGVSIHDKHIEVIVRQMLR
RVTIIEAGDTELLPGELAERSRFEDESRRAVAEGGRPASGRPDLLGITKASLATDSWLSA
ASFQETTRVLTEAAMHAKSDPLLGLKENVILGKLIPAGTGLTRYRNVTVEPTEEAKAALY
ALPDYQAYDYPVFGPGSGEAVRLDDASLGFSDG
NT seq
3882 nt
NT seq
+upstream
nt +downstream
nt
gtgctggacgtcaacttcttcgacgagcttcggatcggcctggccactgccgacgacatc
cgtcagtggagccacggcgaggtcaagaagccggagaccatcaactaccgcaccctcaag
cccgagaaggacggcctcttctgcgagaagatcttcggccccacccgggactgggagtgc
tactgcggcaagtacaagcgggtccgcttcaagggcatcatctgtgagcgctgcggcgtc
gaggtgacccgctccaacgtgcgccgtgagcgcatgggccacatcgagttggccgccccg
gtcacccacatctggtacttcaagggtgtcccgagccggctcggctacctgctcgacctg
gcgccgaaggacctcgagaaggtcatctactttgcggcctacatgatcacctcggtcgac
gaggagcagcggcacgccgacctgccctcgctcgaggcgcagatcgaggtcgagaagaag
gagatcgagaaccgccgcgacggtgacgtgaacacccgcgcgagcaagctcgaggccgac
ctcgccgagctcgagaaggaaggcgccaaggccgacgcgcgccgcaaggtgcgcgagtcc
gccgagcgcgagatgaaccagatccgcaagcgcgccgaccagcaggtcgagcggctcgag
caggtctgggaccgcttcaagaacctcaaggtccaggacctcgagggcgacgaggtgctc
taccgcgagatgcgcgaccggttcggtctgtacttcgagggcgggatgggcgccgcggcg
ctgcagaagcgtctcgagaccttcgacctggacgccgagtcggagtcgctgcgcgagatc
atcgcgaccggcaagggtcagaagaagacccgcgccctgaagcggctcaaggtcgtcacc
gccttccagcagaccaagaacagccccacgggcatggtcctggactgcgtgccggtcatc
ccgccggacctgcgcccgatggtgcagctcgacggtggccgcttcgcgacctccgacctc
aacgacctctaccgccgggtcatcaaccgcaacaaccgtctgaagcgactgctggacctc
ggggctcccgagatcatcgtgaacaacgagaagcggatgctgcaggagtcggtcgacgcg
ctgttcgacaacggccggcgcggtcgtccggtcaccggccccggcaaccgggcgctgaag
tcgctgtccgacatgctcaagggcaagcagggccgcttccggcagaacctgctcggcaag
cgcgtcgactactccggccgtagcgtcatcgtggtcggcccgcagctgaagctgcaccag
tgcggtctgcccaagcagatggccctggagctgttcaagccgttcgtgatgaagcgtctg
gtcgacctcgaccacgcgcagaacatcaagtcggccaagcgcatggtcgagcgcgcgcgt
ccggtcgtgtgggacgtcctcgaagaggtcatcaccgagcacccggtgctgctcaaccgt
gcgcccacgctgcaccgcctcggcatccaggccttcgagccgcagctggtcgagggcaag
gccgtccagatccacccgctcgtctgctcggcgttcaacgccgacttcgacggtgaccag
atggccgtgcacgtgccgctgtcggcggaggcccaggccgaggcccgcatcctgatgctg
tcctcgaacaacatcctcaagccgtccgacggccgtccggtgaccatgccgacccaggac
atgatcatgggtctgttccacctgacgtccgaggtcgaggaggggcagacgggtcgagcc
ttctcgtccgtcgccgaggcgcggatggcgtacgacgccggcgagatccagctcggcacg
ccgatcaaggtgcgcatcgacgacttcgtgccgtcggtcgacgctccgctgcccgagggt
gcccagctgggcgaggacggccgcgccgtcagcgccctggtggagaccaccctgggtcgc
gcgctgttcaacgacacgctcccggaggactacgccttcgtgaacgtgcccgtcgacaag
aagggtctgtcggcgatcgtcaacgacctcgccgagcgctacagcaaggtgcaggtcgcg
gcgtcgctggacgcgctcaaggaggccggtttctactgggccacccgctcgggcacgacc
gtgtccatcgccgacgtcgtcatgccggacaagaccgagatcctggccggctacgagacc
aaggcggccaaggtccagcagcagttcgaccgcggtctgatcaccgacgacgagcgccgt
caggagctcatcgagatctggacccaggcggccaacgacgtctccaaggcgatggaggag
aacttccccaagaagaaccccatctaccggatggtctcctcgggtgcgcgtggtaactgg
ttccagctgcgccagctggccggcatgcgtggcctcatggccaacccgaagggcgagatc
atcccgcgcccgatcaaggcgaacttccgtgagggtctgtccgtgctggagttcttcatc
tccacgcacggcacccgcaagggtctggccgacaccgctctgcggacggccgactcgggt
tacctcacgcgtcgtctggtcgacgtgtcgcaggacgtcatcatccgtgaggacgactgc
ggcaccgagcgcggcctgaccctgccgatcgcgcagcgcaacgccgacggcgagctcgtc
gagcacgaggacgtcgagacctcggtctacgcgcggacgctcgcgtccgacgtggaggtc
gacggagaggtgctggccgcggccggtgccgacctgggcgacgtcaacctggacaagctg
gtcgccgcgggcgtcgaggaggtcaaggtccgttcggtcctgacctgcgagtcgcgcgtc
ggcacctgcgccaagtgctacggccgcagcctggccaccggcaagctggtcgacatcggt
gaggccgtcggcatcatcgcggcccagtcgatcggtgagcccggcacgcagctgaccatg
cgcaccttccacaccggtggtgccgcgggtgacgacatcacccagggtctgccgcgtgtg
gtcgagctgttcgaggcccgcacgcccaagggtgtggcgccgatcgccgaggccagcggc
cgggtgcagatcgaggagaccgacaaggctcgtcgcatcctgctcaccccggacgacggc
tccgaggagcacgcctacccggtcagcaagcgtgcgcgcatgctgatcgaggacggtcag
cacgtcgaggtcggcacgctgctggtgcagggtgcgatcgaccccaagcaggtgctgcgc
atcctcggcccgcgcgcggtgcagaagcacctcgtcgacgaggtgcagagcgtctaccgc
cagcagggtgtgtcgatccacgacaagcacatcgaggtcatcgtgcggcagatgctgcgc
cgcgtgacgatcatcgaggccggcgacaccgagctgctgcccggtgagctcgcggagcgt
tcgcgcttcgaggacgagtcgcgccgtgcggtcgccgagggcggccggccggcgtcgggt
cgccccgacctgctcgggatcaccaaggcgtcgctcgccaccgactcgtggctctcggcc
gcctccttccaggagacgacccgggtgctcaccgaggcggcgatgcacgccaagagcgac
ccgctgctgggcctgaaggagaacgtcatcctcggaaagctcatcccggcgggcaccggc
ctgacgcgctaccgcaacgtcacggtcgagcccaccgaggaggccaaggcggcgctgtac
gccctgcccgactaccaggcctacgactacccggtcttcggcccgggcagcggcgaggcg
gtgcggctggacgacgcgagcctcgggttctccgacggctga
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