Barrientosiimonas endolithica: GCM100_12360
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Entry
GCM100_12360 CDS
T09132
Name
(GenBank) hypothetical protein
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
bei
Barrientosiimonas endolithica
Brite
KEGG Orthology (KO) [BR:
bei00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bei03019
]
GCM100_12360
Enzymes [BR:
bei01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
GCM100_12360
Messenger RNA biogenesis [BR:
bei03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
GCM100_12360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
Motif
Other DBs
NCBI-ProteinID:
BDZ57579
LinkDB
All DBs
Position
1170874..1173747
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AA seq
957 aa
AA seq
DB search
MAGLQLPSTEILPLFARLSAAEQHRVFSRHSGRRVVLATNVAETSLTVPGIRYVIDTGTA
RISRYSQRLKVQRLPIEPVSQASATQRTGRAGRLADGICIRLYSEEDFAARPEFTDPEIQ
RTNLASVILQMTSLGLGDIARFPFVDPPDSRQITDGLRLLEELQAVDPHAVDPRKRLTAV
GRAIATLPVDPRLARMLVAASENGSLREVLVIVAALSIQDPRERPADQQAQADQSHARFK
DEHSDFVGYLNLWRYLKEQQKALSGSAFRRMCKREFLHYLRVREWQDLHTQLRQACKQQG
LVRSDNDASPDQIHQALLTGLLSHVGLRDRDRRDYFGARGARFAIQPGSTLFRRQPDWVM
SAELVETTRLWARTNAVTDPAWVERAAAHLVKRTYAEPHWSRKRGSVMAAERVTLYGVPL
VAGRQVGYGSVDPVLSRELFIRNALVEGDWETRHAFFRENQQLVRELSDLEARARRRDLL
VDDHALMEFYDERIPESVVSAAHFDAWWKKQSRETPDLLTYSRELLLAEGAEEVDQSAFP
KSWRQGELRLRLTYQFEPGTDADGVTVHIPVEQLNQVDDEGFDWLVPGMREELAVALIKS
LPKAIRRSVVPAPDHARAALATIGLEDGPLDEALARALRERVGAPVAAADFDWARVPDHL
RMTFRVEDHRRRRLAEGKVLGELQQQMAGRVRSTIARAASSVEREGLRQWSFGDLPATFE
TKQGKRSVQGFPALVDEGDSAAVKVLASRQEADAASRLGVRRLLLLGTDVPWKRILGLLD
NRQRLALGSNPHGTMQDLLDDALAAAVDSVVAEQPQGQVRSDAAFEQALAGVRQQVVPRV
IEIVDDLVPVLDHSRQLTLRLDAMSQPSVAQLREDVRQQHAELIFPGFVAATGKGACATS
TDICGRRWSGSTRRRVTCPATTSVRRSSRRSSVSAPTCSRSCLRPAASTATWWSCAG
NT seq
2874 nt
NT seq
+upstream
nt +downstream
nt
ttggcgggtctgcagctgcccagcaccgagatcctgccgctgttcgcccggttgtcggcg
gccgagcagcaccgggtgttcagccggcacagcggtcgccgggtcgtgctggccaccaac
gtcgccgagacctcgctcaccgtgccgggcatccggtacgtcatcgacaccggcacggcg
cgcatctcccgctacagccagcggctcaaggtgcagcggctgccgatcgagccggtctcg
caggcctcggcgacgcagcgcaccggtcgtgccgggcggctcgccgacgggatctgcatc
cggctctactccgaggaggacttcgccgcccggccggagttcaccgacccggagatccag
cgcaccaacctggcctcggtcatcctgcagatgacctcgctgggcctcggcgacatcgcg
cgcttcccgttcgtcgacccgcccgactcgcggcagatcaccgacggtctgcggctgctc
gaggagctccaggcggtcgacccgcacgcggtggacccgcgcaagcggctgacggcggtc
ggccgggcgatcgcgacgctgccggtcgacccgcggctggcgcgcatgctggtggccgcc
tcggagaacggctcgctgcgcgaggtgctcgtgatcgtggcggcgctgtcgatccaggac
ccgcgggagcggccggccgaccagcaggcgcaggccgaccagagccacgcccggttcaag
gacgagcactccgacttcgtcggctacctcaacctctggcgatacctcaaggagcagcag
aaagcgttgagcggcagcgcttttcggcgcatgtgcaagcgcgagttcctgcactacctg
cgggtgcgcgagtggcaggacctgcacacccagctgcggcaggcgtgcaagcagcagggc
cttgtgcgcagcgacaacgacgcttcgcccgaccagatccaccaggcgctgctcaccggg
ctgctgtcgcacgtcggtctgcgcgaccgcgaccgccgcgactacttcggcgcccgcggt
gcacggttcgcgatccagccgggctcgacgctgttccgccggcagccggactgggtcatg
tcggccgagctcgtcgagaccacccggttgtgggcgcgcaccaacgccgtcaccgacccg
gcctgggtcgaacgcgccgctgcgcacctggtgaagcggacgtacgccgagccccactgg
tcgcgcaagcgcggcagcgtcatggcggccgagcgggtgacgctgtacggcgtgccgctg
gtggccgggcggcaggtcggctacgggtcggtcgacccggtgctctctcgcgagctgttc
atccgcaacgcgctggtcgagggcgactgggagacgcggcacgcgttcttccgcgagaac
cagcagctggtccgcgagctgtccgacctcgaggcgcgggcgcgacgccgtgacctgctc
gtcgacgaccacgcgctgatggagttctacgacgagcggatccccgagtccgtcgtgtct
gcagcgcatttcgacgcctggtggaagaagcagtcgcgcgagacgcccgacctgctgacc
tacagccgcgagctgctgctggccgagggagccgaggaggtcgaccagtcggccttcccc
aagagctggcggcagggcgagctgcggctgcggctgacctatcagttcgagcccggcacc
gacgccgacggcgtcacggtgcacatcccggtcgagcagctcaaccaggtcgacgacgag
gggttcgactggttggtgcccggcatgcgcgaggagctcgcggtggcgctgatcaagtcg
ctgcccaaggcgatccgccgcagtgtcgtgcccgcgcccgaccacgcgcgggccgcgctc
gcgacgatcggcctcgaggacggtccgctcgacgaggcgctggccagggcgctgcgcgag
cgggtcggtgcgccggtcgctgcggccgacttcgactgggcgcgggtgcccgaccacctg
cgcatgacgttccgcgtcgaggaccaccggcgccgccggctcgccgaggggaaggtgctc
ggcgagctgcagcagcagatggccggacgggtgcgctcgacgatcgcgcgagccgcgtcg
tcggtcgagcgcgaaggcttgcggcagtggagcttcggcgacctgcccgcgacgttcgag
accaagcagggcaagcgcagcgtgcagggcttccccgcgctggtcgacgagggcgactcg
gcggcggtcaaggtgctggcgagccggcaggaggccgacgccgccagccgcctcggcgtg
cggcggctgctgctgctcggcaccgacgtgccctggaagcgcatcctcgggctgctcgac
aaccggcagcggctcgcgctcggcagcaacccgcacggcaccatgcaggacctgctcgac
gacgccctggccgcggccgtcgactcggtcgtggccgagcagccgcagggccaggtgcgc
agcgacgcggcgttcgagcaggccctcgccggcgtgcgccagcaggtggtgccgcgcgtc
atcgagatcgtcgacgacctggtgccggtgctcgaccacagccggcagctgacgctgcgg
ctcgacgcgatgagccagccgtccgtggcccagctgcgcgaggacgtacgtcagcagcac
gccgagctgatcttcccgggcttcgtggcggcgaccggcaagggcgcctgcgcgacctcg
accgatatctgcgggcggcgctggagcggctcgacaaggcgccgggtgacctgccccgcg
acgacgagcgtgcggcggtcgtcgcgacggtcgagcgtgagcgcgccgacctgctcgcga
agctgcctgcgccccgccgcctcgaccgcgacgtggtggagctgcgctggatga
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