Barrientosiimonas endolithica: GCM100_22130
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Entry
GCM100_22130 CDS
T09132
Name
(GenBank) hypothetical protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bei
Barrientosiimonas endolithica
Pathway
bei03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bei00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GCM100_22130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bei03019
]
GCM100_22130
03009 Ribosome biogenesis [BR:
bei03009
]
GCM100_22130
Enzymes [BR:
bei01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
GCM100_22130
Messenger RNA biogenesis [BR:
bei03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GCM100_22130
Ribosome biogenesis [BR:
bei03009
]
Prokaryotic type
rRNA processing factors
GCM100_22130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Rep_1
Motif
Other DBs
NCBI-ProteinID:
BDZ58556
UniProt:
A0ABN6YNI5
LinkDB
All DBs
Position
complement(2108036..2109991)
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AA seq
651 aa
AA seq
DB search
MTKVREPRKGRDEVTAIKGSTRLEAKKQRRREGREAGRRRTVITEAEFLARRESVERSMV
VREREGRTQIGVLEDGVLVEHYVSSDTRSGSMAGNVYLGRVQNVLPSMEAAFVDIGRGRN
AVLYAGEVNWDAAGMEGQPKRIENALKSGETVLVQVTKDPIGHKGARLTSQISLPGRYLV
YVPGNSMTGISRKLPDTERARLKKILKEVVPEDAGVIVRTAAEGASEEELRADVERLTKA
WEKIQKKASSSGTSAPSLLHGESELTVRVIRDVFNEDFSSLVVSGDGAWSQISDYVESVA
PDLAPRLEKWTGEKDVFTVHRVDEQLAKALDRKVWLPSGGSLIIDRTEAMTVIDVNTGKF
VGSGGNLEETVTKNNIEAAEEIVRQMRLRDIGGIIVVDFIDMVLEANRDLVVRRLLECLG
RDRTKHQVAEVTSLGLVQMTRKRVGSGLLEIFSEPCETCQGRGVVVHDHPVEKQGGGNGN
GGGGNGGGGGGKSRRGRGGKSGQQDSGREGKDGQSGQNGQNGQHERVDSNGRTPAQIAAA
AHAAAVGKLEQAKDEQARDDAPAQPETPAAQGRSEQQDRSEAPAAQGRSEQQDRSEAPAA
GQSQADAGEPAEPVRRPRRRRGRVVAPAGPPGAAKTAEGGSTDADQDPAGG
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
gtgaccaaggtgcgcgagccgcgcaagggccgcgacgaggtcaccgccatcaagggctcg
acccggctggaggccaagaagcagcgccgccgagaggggcgcgaggccggccgccgccgt
acggtcatcaccgaggcagagttcctcgcccgccgcgagagcgtcgagcgctcgatggtc
gtgcgcgagcgcgaggggcgcacccagatcggggtgctggaggacggcgtcctcgtcgag
cactacgtcagcagcgacacccgctcgggcagcatggccggcaacgtctacctggggcgc
gtgcagaacgtgctgccgagcatggaggcggcgttcgtcgacatcggccggggccgcaac
gcggtgctgtacgccggtgaggtcaactgggacgccgccggcatggagggccagcccaag
cgcatcgagaacgcgctgaagtcgggcgagacggtgctggtgcaggtcaccaaggacccg
atcggccacaagggcgcccggctcacctcgcagatctcgctgccgggccgctacctggtc
tacgtccccggcaactcgatgaccggcatctcccgcaagctgcccgacaccgagcgggcc
cggctgaagaagatcctcaaggaggtcgtgcccgaggacgccggcgtcatcgtgcgcacc
gccgccgagggcgcgagcgaggaggagctgcgcgccgacgtcgagcggctcaccaaggcc
tgggagaagatccagaagaaggcctcctcctccggcacgagcgcaccgtcgctgctgcac
ggggagtccgagctgacggtgcgggtcatccgggacgtgttcaacgaggacttctcctcg
ctggtcgtctccggcgacggcgcctggtcgcagatcagcgactacgtcgagtcggtcgcg
cccgacctggcgccgcggctggagaagtggaccggcgagaaggacgtgttcaccgtccac
cgcgtcgacgagcagctcgccaaggctctcgaccgcaaggtctggctgccctccggcggg
tcgctgatcatcgaccgcaccgaggcgatgaccgtcatcgacgtcaacaccggcaagttc
gtcggctccgggggcaacctcgaggagaccgtcaccaagaacaacatcgaggccgccgag
gagatcgtgcgccagatgcggctgcgcgacatcggcgggatcatcgtcgtcgacttcatc
gacatggtcctggaggccaaccgcgacctggtcgtgcgccggctgctggagtgcctcggc
cgcgaccgcaccaagcaccaggtcgccgaggtcacctcgctgggcctggtgcagatgacc
cgcaagcgggtcggcagcgggctgctggagatcttctccgagccgtgcgagacctgccag
ggccgtggcgtcgtcgtgcacgaccacccggtcgagaagcagggcggcggcaacggcaac
ggcggtggcggcaacggcggcgggggcggcggcaagagccggcggggccgtggcggcaag
tccggccagcaggactccggccgcgagggcaaggacggccagtccgggcagaacggccag
aacggccagcacgagcgggtcgactccaacgggcgcacgcccgcccagattgccgccgcc
gcccacgccgcggcggtcggcaagctggagcaggccaaggacgagcaggcgcgcgacgac
gcccccgcccagccggagacgccggccgcgcagggtcggtccgagcagcaggaccggtcc
gaggcgccggccgcgcagggtcggtccgagcagcaggaccggtccgaggcgccggccgcg
gggcagagccaggccgacgccggggagccggccgagcccgtacgccgtccgcgccgtcgg
cgtggccgggtcgtcgccccggccggtccgcccggtgccgcgaagaccgccgagggcggt
tcgaccgacgccgaccaggaccccgccggcggctga
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