Barrientosiimonas endolithica: GCM100_28860
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Entry
GCM100_28860 CDS
T09132
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bei
Barrientosiimonas endolithica
Pathway
bei03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bei00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GCM100_28860 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bei03400
]
GCM100_28860 (mfd)
Enzymes [BR:
bei01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GCM100_28860 (mfd)
DNA repair and recombination proteins [BR:
bei03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GCM100_28860 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
Glyco_tran_WecG
MFD_D3
AAA_22
RecG_dom3_C
UB2H
AroM
DUF4350
Motif
Other DBs
NCBI-ProteinID:
BDZ59229
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All DBs
Position
complement(2750476..2754033)
Genome browser
AA seq
1185 aa
AA seq
DB search
MSLRPLLDVLATDPAVRRVLEHVGRSAVVDVAAAPGARAPLTTLIATGAERPVPVLAVTA
TGREAQDLAAGLRTFLPAGAVAEMPSWETLPHERLSPRSDTVGRRLGVLRRLAHPVEGDP
EHGPLQVVVASVRALMQPIAKGLGDLEPVALQVGDERPLEQVVEALAAAAYTRTDMVERR
GEFAVRGGIVDVFPPTEEHPLRVEFFGDEVDEVRHFKVADQRTIAADEAGAPEELGLWAP
PCRELLLTDDVRLRAAELAEQLPGVADLLHKVAEGIAVEGMESLMPALLADGMETLLDVL
PEGTHVVLSDPERVRTRAHDLVATSEEFLQASWANAAAGNAVPVDLESVLGTASYWGLAD
LREHALETGRPWWSLSSFASDEDLAEFVEDSLPGERVTVPTEEVPAYRGNTEQAVADLRS
FVEAGRRVLVVTEGAGLGQRVSEVLRDNDIPVRELTDLQPRTVEVATGSLGHGFALPTCD
LVVLTEADLTGAAGATGGSTKDMRKMPSRRRNVVDPLQLRKGDFVVHEQHGVGKFVEMMQ
RTVAGATREYLVVEYASSKRGQPGDRLFVPTDQLDQVTRYVGGELPTLNKLGGSDWQKTK
SRARRHVRQIAGQLIQLYSARMASPGHAFAPDSPWQRELEDAFAYIETPDQLSSIDEVKA
DMEKSVPMDRLICGDVGYGKTEIAVRAAFKAIQDGKQVAVLVPTTLLVKQHQQTFSERYA
GFPVTVRSLSRFQSDKEAREVIAGLADGSVDLVIGTHRLLSNEIRFKDLGLVVVDEEQRF
GVEHKEQLKQLRTAVDVLAMSATPIPRTLEMAVTGIREMSTLATPPEERHPVLTFVGGYD
EKQITAAIRRELMREGQVFFVHNKVQSIEKAAARLRELVPEARITTAHGKMSEQRLEEVV
VDFWERRSDVLVCTTIVETGLDISNANTLIVERSDVLGLSQLHQLRGRVGRGRERAYAYF
LFPPDKPLTETAHDRLETIASHTDLGAGMQVAMKDLEIRGAGNLLGGEQSGHIAGVGFDL
YVRMVGEAVADFRSDGTAEKPPSEVKIELPVDAHLPHDYVPGSGCGWRRTRSSRPSRTRR
RSPRSWRSWRTATARPRSRPSTSSRWRGCARWPAAPASATSRCRARTCGSPRSTCARARR
CGCSGSTRGRSSARRCTRSWCPPRAPPPSAAARCATPRCCSGPAS
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
gtgagcctccgcccgctgctcgacgtcctcgccaccgacccggccgtgcgccgggtgctc
gagcacgtcggtcgttccgccgtggtcgacgtcgccgcggcgccgggcgcccgcgcgccg
ctcaccacgctgatcgccaccggcgccgagcggccggtgccggtgctcgcggtgaccgcc
accgggcgcgaggcgcaggacctcgcggcggggctgcgcaccttcctgcccgcgggcgcg
gtcgccgagatgcccagctgggagacgctgccgcacgagcggctgagcccgcgcagcgac
accgtcggccgccggctcggggtgctgcgccgcctcgcgcaccccgtcgagggcgacccc
gagcatggcccgctgcaggtcgtcgtcgcgtcggtgcgcgcgctgatgcagcccatcgcc
aagggcctcggcgacctcgagccggtcgcgctgcaggtgggcgacgagcgcccgctcgag
caggtcgtcgaggcgctcgccgccgcggcctacacccgcaccgacatggtcgagcggcgc
ggcgagttcgccgtgcgcggcggcatcgtcgacgtcttcccgcccaccgaggagcacccg
ctgcgggtggagttcttcggcgacgaggtcgacgaggtgcgccacttcaaggtcgccgac
cagcgcaccatcgccgccgacgaggccggcgcccccgaggagctcgggctgtgggcgccg
ccgtgccgcgagctgctgctcaccgacgacgtacgcctgcgcgcggccgagctcgccgag
cagctgcccggcgtggccgacctgctgcacaaggtcgccgagggcatcgcggtcgagggc
atggagtcgctcatgcccgcgctgctcgccgacgggatggagacgctgctcgacgtgctg
cccgagggcacccacgtggtgctgtccgaccccgagcgggtgcgcacccgcgcgcacgac
ctggtcgcgaccagcgaggagttcctgcaggcgtcgtgggccaacgccgccgcaggcaac
gccgtgcccgtcgacctggagtcggtgctcggcaccgcgtcctactggggtctcgccgac
ctgcgcgagcacgcgctggagaccgggcgcccctggtggtcgctgtcgtcgttcgccagc
gacgaggacctcgccgagttcgtcgaggactccctgcccggggagcgggtgacggtgccg
accgaggaggtgccggcgtacagggggaacacggagcaggccgtcgccgacctgcgctcg
ttcgtcgaggccggccgccgcgtgctcgtcgtcaccgagggggcggggctggggcagcgg
gtctcggaagtgttgcgcgacaacgacattcccgtgcgcgagctcaccgacctgcagccg
cgcaccgtcgaggtcgcgaccggctcgctcggtcacggcttcgcgctgccgacctgcgac
ctggtcgtgctcaccgaggccgacctcacgggcgcggccggcgccaccggcggcagcacc
aaggacatgcgcaagatgccctcgcgccggcgcaacgtggtcgacccgctgcagctgcgc
aagggcgacttcgtggtgcacgagcagcacggcgtcggcaagttcgtcgagatgatgcag
cgcaccgtcgccggcgcgacccgcgagtacctcgtggtcgagtacgccagcagcaagcgc
ggccagcccggcgaccggctgttcgtgccgaccgaccagctcgaccaggtcacgcggtac
gtcggtggcgagctgcccacgctcaacaagctgggcgggtcggactggcagaagaccaag
tcgcgcgcccgtcggcacgtgcgccagatcgcggggcagctgatccagctgtactccgcg
cggatggcctcgcccggtcacgcgttcgcgccggacagcccgtggcagcgcgagctggag
gacgccttcgcctacatcgagacgcccgaccagctctccagcatcgacgaggtcaaggcc
gacatggagaagtcggtgccgatggaccggctgatctgcggcgacgtgggttacggcaag
accgagatcgcggtgcgcgcggcgttcaaggcgatccaggacggcaagcaggtcgcggtg
ctcgtgccgacgacgctgctggtcaagcagcaccagcagaccttctccgagcgctacgcc
ggcttcccggtgacagtgcgctcgctgtcgcgcttccagtccgacaaggaggcgcgcgag
gtcatcgcggggctggccgacgggtcggtcgacctggtgatcggcacccaccggctgctg
tcgaacgagatcaggttcaaggacctcggcctggtcgtggtcgacgaggagcagcgcttc
ggcgtcgagcacaaggagcagctcaagcagctgcgcacggccgtcgacgtgctcgccatg
tcggccacgccgatcccgcgcacgctcgagatggcggtcaccggcatccgcgagatgtct
actctcgcaacgccgcccgaggagcggcacccggtgctgaccttcgtcggcggatacgac
gagaagcagatcaccgcggcgatccggcgcgagctgatgcgcgagggacaggtcttcttc
gtgcacaacaaggtgcagtcgatcgagaaggccgcggcccggctgcgcgagctggtgccc
gaggcccgcatcaccacggcgcacgggaagatgagcgagcagcggctcgaggaggtcgtc
gtcgacttctgggagcgccgctccgacgtgctggtctgcaccacgatcgtcgagaccggc
ctggacatctccaacgccaacaccctcatcgtcgagcgctccgacgtgctcggcctctcc
cagctgcaccagctgcggggacgcgtcgggcgcggccgcgagcgggcgtacgcctatttc
ctgttcccgcccgacaagccgctcaccgagaccgcgcacgaccggctcgagacgatcgcc
agccacaccgacctcggcgcgggcatgcaggtcgcgatgaaggacctggagatccgcggc
gcgggcaacctgctcggcggtgagcagtccggccacatcgccggcgtcggcttcgacctg
tacgtccgcatggtcggcgaggcggtcgccgacttccgctccgacggcacggccgagaag
ccgccgtcggaggtgaagatcgagctgccggtcgacgcccacctgccgcacgactacgtg
ccggggagcggctgcggctggaggcgtacaagaagctcgcgaccgtcgaggacgaggcgg
cgctcgccgcgatcgtggaggagctggaggaccgctacggcacgcccccggagccggccc
agcacctcatcgaggtggcgcggctgcgcacggtggcccgccgcgccggcatcagcgaca
tcgcggtgcagggcaagaacgtgcggttctccccggtcgacctgcgcgagagccaggcgc
tgcggctgcagcggctctacaaggggacggtcatccgcgaggcgatgcaccagatcctgg
tgcccgccccgcgcaccgccgccgtcggcggccgcccgctgcgcgacaccgaggtgctgc
agtgggcccgccagctga
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