Barrientosiimonas endolithica: GCM100_36920
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Entry
GCM100_36920 CDS
T09132
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
bei
Barrientosiimonas endolithica
Pathway
bei03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
bei00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
GCM100_36920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bei03400
]
GCM100_36920
Enzymes [BR:
bei01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
GCM100_36920
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
GCM100_36920
DNA repair and recombination proteins [BR:
bei03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
GCM100_36920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
Zn_ribbon_TFIIB
NFACT_N
Ribosomal_S13
Ribosomal_60s
Motif
Other DBs
NCBI-ProteinID:
BDZ60035
LinkDB
All DBs
Position
3523028..3523888
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AA seq
286 aa
AA seq
DB search
MPELPEVQALADFLRGRIVDQAITAVELGSISVLKTYDPAPQALSGLLVSDVQRHGKFVD
IDADGLHLVFHLARAGWLRWSEEAPKALLKPGRSPIAMRVRFSDGSGFDLTEAGTKKGLA
AYVVHDPADVPGIASLGPDPLADDFDLAAFRALLEGKRTQIKGLLRDQSVLAGVGNAYSD
EVLHAAKLSPFALASSLDDEEIERLFAALQETLRGAVAAAAGKPAAELKDAKRAGMRVHG
RTGEQCPVCGDVVREVSFADSSLQYCATCQTGGKPLADRRMSRLLK
NT seq
861 nt
NT seq
+upstream
nt +downstream
nt
gtgcctgagcttcccgaggtgcaggcgctcgcggacttcctgcgcgggcgcatcgtcgac
caggccatcaccgcggtcgagctgggctcgatcagtgtgctgaagacgtacgaccctgcg
ccgcaagcactttcgggcctgctggtcagcgacgtgcagcggcacggcaagttcgtcgac
atcgacgccgacgggctgcacctggtcttccacctggctcgcgccgggtggctgcgttgg
tcggaggaggcgccgaaagcccttctgaagcctgggcgttcgccgatcgcgatgcgggtg
cgcttctccgacggcagcggtttcgacctgaccgaggcgggcacgaagaaggggctggcg
gcgtacgtcgtccacgacccggccgacgtgcccggcatcgcctcgctcggccccgacccg
ctcgccgacgacttcgacctcgccgcgttccgcgcgctgctggagggcaagcgcacccag
atcaaggggctgctgcgcgaccagtcggtgctcgcgggcgtgggcaacgcctactccgac
gaggtgctgcacgccgcgaagctgtcgccgttcgcgctcgcgtcctcgctcgacgacgag
gagatcgagcggctgttcgccgcgctgcaggagacgctgcggggcgccgtggccgcagct
gcgggcaagcccgcggccgagctgaaggacgccaagcgcgccggcatgcgggtgcacggc
cgcaccggcgagcagtgcccggtgtgcggcgacgtggtgcgcgaggtgagcttcgccgac
tcctcgttgcagtactgcgcgacctgccagaccggcggaaagccgctcgccgaccggcga
atgtcacgcctgctgaagtga
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