Bradyrhizobium elkanii: BE61_57480
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Entry
BE61_57480 CDS
T07520
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bel
Bradyrhizobium elkanii
Pathway
bel03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bel00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BE61_57480 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bel03400
]
BE61_57480 (mfd)
Enzymes [BR:
bel01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BE61_57480 (mfd)
DNA repair and recombination proteins [BR:
bel03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BE61_57480 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
UB2H
RecG_dom3_C
SecA_DEAD
AAA_22
AAA_16
Motif
Other DBs
NCBI-ProteinID:
BBC00292
LinkDB
All DBs
Position
complement(5773542..5777048)
Genome browser
AA seq
1168 aa
AA seq
DB search
MKSPAAMLAPGRVLTIANVAEGAEGLVISDLARAIAAQPKRPAVSLAVVCRDGARMQQLA
RALEFFAPDIAVMQVPAWDCQPYDRVSPHSGILAQRLTALAKLSRLVGSDKPLIVLTTVN
AAVQRVPARDQVAAQALSVAPGNVVPMDSVVAWLEHNGYTRSSTVREPGEYAVRGGILDL
FPAGLDQPVRFDFFGDSLESIRTFDAETQRTLLDMRGLDLVPVSEFQLTTETIRRFRMGY
VAAFGAPERDDQLYEAVSEGRRHPGMEHWLPLFQERMDTLFDYLDGATVAIEPQGEDAAR
ERFSQISDYYDARREALEHPGSGAIYKPLPPDKLYLTEAEWTKLLGDAPLARLTPFAVPE
GSPDVFDAGARQGRNFAPERADTNVNVFEAVVGHVGALQSQRKKVVIALWSEGSRDRMGA
MLRDHKLLNTTSVNTWRIVQATPRNETMLAVLGMESGFETDEFAVISEQDILGDRLVRPR
KASRKLDNFISEVTSLATGDLVVHVEHGIGRFVGLQTLEVSGAPHDCLELHYAAETKLFL
PVENIELLSRYGSDSANVELDRLGGGGWQARKAKLKNRIREIAGELIKIAAERQLHEAPK
FPLQPHVYDEFCARFPYEETEDQLGAITSTLKDLEIGRPMDRLICGDVGFGKTEVALRAA
FAVALEGKQVAVVVPTTLLARQHSRTFTERFRGFPVNIAQASRLVSTKELNQVKKGLTDG
NVDIVVGTHALLGKAIKFRDLGLLIVDEEQHFGVSHKERLKQLRAQVHVLTLSATPIPRT
LQLALTGVRELSIIASPPVDRLAVRTFVAPHDPLMIREALLRERYRGGQAFYVVPRIEDL
AGVKDFLDKNVPEMKVAVAHGQMPPTVIEDIMSAFYDGKYDILLSTTIVESGLDIPNANT
LIVHRADMFGLAQLYQLRGRVGRSKLRAYALFTLPAQQKITAQAERRLKVLQSLETLGAG
FQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQSMLEEAIVNLKAGVAEPAADRWSPQI
TIGMPVLIPEDYVNDLSVRLSLYRRLADLDTDEDIDAFAAEMRDRFGVLPDEVRYLFKVA
AIKAYCRRANVGKVDAGPKGAVIAFRDNSFAHPERLVSFIRQHGQAAKVRPDMKVVFFQE
WDTPEERLAGTTEILRQLANLAESKKAA
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcaccggccgcgatgctcgcgcccggccgggtgctgaccatcgccaacgtcgcc
gagggcgccgaagggctcgtcatctccgatctggcgcgcgccatcgccgcgcagccgaag
cgtccggcggtgagccttgccgtggtgtgccgcgacggcgcgcggatgcagcaactcgcc
cgcgcgctggagttctttgcacccgatatcgccgtgatgcaggttccggcctgggactgc
cagccctatgaccgcgtctcgccgcattccggcattttggcgcagcgcctgaccgccttg
gcaaaactgtcgcggctggtcggcagcgacaagccgctgatcgtgttgaccaccgtgaac
gccgccgtgcagcgggtgccggcgcgcgatcaggtcgcggcgcaagcattgtcggtcgcg
cccggcaacgtcgtgccgatggactcggtcgtcgcctggctcgagcacaatggctacacc
cgttcgtcgaccgtgcgcgagcccggcgaatatgcggtgcgcggcgggatcctcgatctg
tttccggctggcctcgaccagccggtgcgcttcgatttcttcggtgatagtctggaatcg
atccgtaccttcgatgccgagacccagcgcacgctgctcgacatgcgcgggctcgatctc
gtgccggtctcggaattccagctcaccaccgagaccatccggcgtttccgcatgggctat
gtcgccgcgttcggcgcgccggaacgcgacgaccagctttatgaagccgtctcggaagga
cggcgccaccccggcatggagcattggctgccgctgttccaggagcggatggacacgctg
ttcgattatctcgacggcgcgacggttgcgatcgagccgcagggcgaggacgccgcgcgc
gagcgcttctcgcagatatcagactattacgacgcgcggcgcgaggcgctggagcatccg
ggtagcggcgcgatctacaagccgctgccgccggacaagctctatctgaccgaggccgaa
tggaccaagctgctcggcgatgcgccgctggcgcggctgacgccgttcgcggtgcccgaa
ggctcgcccgacgtgttcgacgccggtgcgcggcagggccgcaatttcgcccccgaacgc
gccgacaccaacgtcaacgtgttcgaggccgtggtcggccatgtcggcgcgctgcagagc
cagcgcaagaaggtggtgatcgcgctgtggagcgagggctcgcgcgaccgcatgggcgcg
atgctgcgcgaccacaagctcctgaacacgaccagcgtcaacacctggcggatcgtgcag
gcgacgccgcgcaacgaaaccatgctggcggtgctcggcatggaatccggcttcgagacc
gacgagttcgccgtcatcagcgagcaggacattctcggcgaccgcctggtgcggccgcgc
aaggcgagccgcaagctcgacaatttcatctcggaggtgacgagccttgcgactggcgat
ctcgtggtccacgtcgagcacggcatcggccgcttcgtgggcttgcagacgctcgaagtc
tccggcgcgccgcatgactgtctcgagctgcattatgccgccgaaacaaaactgttcctg
ccggtcgagaacatcgagctgctgtcgcgctacggctccgacagcgccaatgtcgagctc
gatcgtctgggtggcggcggctggcaggcgcgcaaggcgaagctgaagaaccgcattcgc
gagatcgcgggcgagttgatcaagatcgcagccgagcggcagctgcacgaggcgccgaaa
ttcccgttgcagccgcacgtctatgacgagttctgcgcgcgcttcccctatgaggagacc
gaggatcagctcggggccatcacctcgaccttgaaggacctcgagatcggccgcccgatg
gaccggctgatctgcggcgacgtcggcttcggcaagaccgaggtggcgctgcgtgcggcg
ttcgccgtggcgctggagggcaagcaggtcgcggtcgtggtgccgaccacgctcttggcg
cgccagcactcacggaccttcaccgagcgcttccgcggcttcccggtcaatatcgcgcag
gcctcgcggctggtctcgaccaaggagctgaaccaggtcaagaaggggctcaccgacggc
aatgtcgacatcgtcgtcggcacccatgcgctgcttggcaaggccatcaagttcagggat
ctcggcctgctgatcgtcgacgaggagcagcatttcggcgtcagccacaaggagcggctg
aagcagctgcgcgcccaggtccatgtgctgacgctgtcggcaaccccgatcccgcgcacc
cttcaacttgcgttgaccggcgtccgcgagctctcgatcattgcctcgccgccggtcgat
cgccttgcggtgcgcaccttcgtcgcaccgcacgatcccctgatgatccgcgaggcgctg
ctgcgcgagcgctaccgtggcggacaggcgttctatgtcgtgccgcggatcgaggacctc
gccggcgtcaaggacttcctcgacaagaacgtgccggagatgaaggtcgcggtcgcccac
ggccagatgccgccgaccgtgatcgaggacatcatgtccgcgttctacgacggcaagtac
gacatcctgctgtcgaccacgatcgtcgagtccggtctcgacatcccgaacgccaacacg
ctgatcgtgcaccgcgccgacatgttcggcctcgcccagctctaccagctgcgcggccgc
gtgggccgctccaagctgcgcgcctatgcactgttcacgctgccggcgcagcagaagatc
acggcgcaggcggagcgccggctcaaggtgctgcaatcgctggagacgctgggggccggt
ttccagctcgcctcgcacgacctcgacatccgcggcgccggcaatctgctcggcgaagag
cagtccggccacatcaaggaagtgggcttcgagctgtaccagtcgatgctggaggaggcg
atcgtcaacctcaaggccggcgtcgccgagcccgccgccgaccgctggtcgccgcagatc
acgatcggcatgccggtcctgatccccgaggactatgtcaacgacctcagcgtgcggctg
tcgctgtatcgccggctcgccgatctcgacaccgacgaggacatcgacgcctttgccgcc
gagatgcgcgaccgcttcggcgtgctgccggacgaggtgcgctatctgttcaaggtcgcc
gcgatcaaggcctattgccgaagggccaatgtcggaaaggtcgacgccggcccgaagggc
gccgtgatcgcattccgcgacaacagctttgcccatccggagcggctggtgagcttcatt
cgccagcacggccaggccgccaaggtgcggcccgacatgaaggtggtgttcttccaggag
tgggatacgcccgaagagcggctcgcgggcaccaccgagatcctgcgccagctcgccaat
ctcgcggagagcaagaaggcggcttga
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