Blochmannia endosymbiont of Camponotus modoc: M9396_00075
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Entry
M9396_00075 CDS
T08359
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
bem
Blochmannia endosymbiont of Camponotus modoc
Pathway
bem03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bem00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
M9396_00075 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bem03400
]
M9396_00075 (sbcB)
Enzymes [BR:
bem01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
M9396_00075 (sbcB)
DNA repair and recombination proteins [BR:
bem03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
M9396_00075 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
M9396_00075 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
M9396_00075 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
SAM_CEP-1_C
Motif
Other DBs
NCBI-ProteinID:
URJ26335
LinkDB
All DBs
Position
complement(15861..17363)
Genome browser
AA seq
500 aa
AA seq
DB search
MLMRVNVTQPSFFIYDYETFGINPALDRPAQFAGIRTNSALKPIEKEEVFFCRLSNDYLP
DPQSVLITGIVPQDTLRHGLIESEFARRIHQLFCIPKTCILGYNNIHFDDEFSRNIFYRN
FHDPYLWAYQRGNSRWDLLHVLRACYSLCPNGIIWPLNTQNKPSFRLKDLAQANSIKHLS
AHDAMSDVYATLELTKLIKEVQPQLFQFLFDHRTKYQLQKIIDLDTMNPLIFIMNKINNK
YKNFITHIAPIARHPTNPNILIACDLNGDIDTLVNLNINTIYQKLYSNHTTIYDIFKKIP
LRLIRLNACPILIPINFFDKKNINTAYTMQLSINYQYCLKNLNFIRMHENSVYLRNKINT
LYTIIGAYINQQNLYNNLHVDSQLYHKFFNNSDRKIIESIRKTHAKELKNLCTDHVDTRL
KSLLFYYRARNFPNTLNDQEQKKWLNYKKNKLFNKDQSKSYNDKLNQLLSIYKYNDQKIT
LLHALQKYYQYLYEAYFHFH
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atgctcatgcgtgttaatgttacacaacctagtttttttatttatgattatgaaactttt
ggcatcaatccagcgctagataggccagcgcaatttgccggaattcgtacgaattccgca
ttaaaacctatagaaaaagaagaagtcttcttctgtcgcttatcaaatgattacctcccc
gatccgcaatctgtcctcattacaggaatcgttcctcaagatactttacgtcatggattg
attgaatctgagttcgctcgtcgtattcatcaattattttgtatccctaaaacttgtatc
cttggatacaataatattcattttgacgatgaattcagtagaaacattttttatagaaat
tttcatgacccttacttatgggcttatcagcgaggaaattcccgatgggacttattacat
gtgctacgtgcttgttattcactatgtccaaatggtattatatggccattgaacactcaa
aataaacccagttttcgtctgaaagatttagcacaagcaaattctataaaacatctcagc
gcacatgacgctatgtcagatgtatacgctactttagaattaacaaaattaataaaagaa
gttcagccacaattatttcaatttctatttgatcatcgcaccaaatatcaattacaaaaa
ataatcgatctagataccatgaatcctctgatatttataatgaataaaataaataataaa
tacaaaaattttataactcatatagctccaatcgctcgacatcctacaaatcctaacatt
ttaatagcatgtgatttaaatggtgatatagatactttagttaatttaaatattaatacg
atatatcaaaaattatattctaatcacacaacgatatatgatatttttaaaaaaatacca
ctacgattgattcgattaaatgcgtgccccattttaataccaataaacttttttgacaaa
aaaaatattaacactgcttataccatgcagctctccatcaactatcaatactgtttaaaa
aacttaaattttattagaatgcatgaaaatagcgtctatctacgtaataaaataaacaca
ctatataccattataggagcttacatcaatcaacaaaatctatacaataatcttcatgta
gacagtcaactatatcacaaattcttcaataattctgatcgcaaaataattgaaagtatc
cgtaaaactcatgcaaaagagttaaaaaatttatgcactgaccacgttgatactcgttta
aaatcactgttattctactatagagcccgaaattttcctaatactttaaatgaccaagaa
caaaaaaaatggttgaactataaaaaaaataaattatttaataaagatcaatcaaaatct
tataacgataaactgaatcaacttctgtcaatctataaatataatgatcaaaaaattaca
cttttacatgcattacaaaaatattatcaatatctttatgaagcttattttcattttcat
taa
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