Blochmannia endosymbiont of Camponotus modoc: M9396_00350
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Entry
M9396_00350 CDS
T08359
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bem
Blochmannia endosymbiont of Camponotus modoc
Pathway
bem03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bem00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M9396_00350 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bem03019
]
M9396_00350 (rne)
03009 Ribosome biogenesis [BR:
bem03009
]
M9396_00350 (rne)
Enzymes [BR:
bem01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
M9396_00350 (rne)
Messenger RNA biogenesis [BR:
bem03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
M9396_00350 (rne)
Ribosome biogenesis [BR:
bem03009
]
Prokaryotic type
rRNA processing factors
M9396_00350 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
URJ26377
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Position
complement(84019..86610)
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AA seq
863 aa
AA seq
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MKRMLINATQQEELRVALVDGQRLYDLDIETVGHEQKKSNIYKGKIIRIEPSLEAVFVDY
GVERHGFLPIKEISHEYFLSSSSSYNKFNIKEILCEGQELIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPKSGGISRRIEGNDRVGLKEILSTLELPEGMSLIIRTAGLGKSIEAL
EWDLTSRLQHWKAIKNTAEKHFAPFLIHQDSNVIVRAFRDYLRPDIGEILIDNPKIMNLA
KEHITSLGRPDFIKKIKFYNGDIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSARSTKGADIEDTAFHTNLEATDEIARQLRLRDVGGLIVIDFIDMTPIRHQREIE
NSLKIAVHQDRARIQIGHISKFGLLELSRQRLSTSLGESSHHICPRCSGTGSIRDNESLS
LSILRLIEEEALKDNTYEVHAIVPVAIASYLLNEKRKAISDIEQRQKGVRAIIVPYEQMK
TPNYEIRRIRKGETYNKPSYLLATNQDYEITQSSGEIISSNYTDTTEKLQSTTNTPSNLV
PTYNKIFYYANFKLQFKSKREIPWFDKIKNRCHKILSLCITSYNNLKQILSKIITKNINW
IYTKIIYQHKPSQTVNHYLKSYPNFYSKYNNNNKKNYTHNTKNKTDLNNRKKITDFFNKN
NNNTKSLSKFNDNIYKSAPTPCYTDPIQSLEKITKKPSIQRYKKRYTHDVKHQYLNKAHH
SEYWIWRKHHQSEHNLHMQVNKEPVASININSYRTYNTPDSRIFDKKTTVAEVNSNTIDN
SKNIHTSDLMSNTLHIPKNTNTIIHYPHFKHSTAKQNNNISQQNNNNRTQLIRRIRRSSR
HFRINFKYRLQQRREKITLKKMQ
NT seq
2592 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaattaacgctactcagcaagaagaattacgagtagcattagtagat
gggcaacgattatatgatctagatattgaaacagtgggtcatgaacaaaagaaatcaaat
atttataaaggaaaaattatccgaattgaacctagtttagaagcagtatttgtagattat
ggcgtcgaacgacacggatttcttcctataaaagaaatttcgcacgaatattttctttct
tcgtcatcttcctataataaattcaatattaaggaaattttatgtgaaggacaagaacta
attgtacaaatagataaagaagaaagaggcaataaaggtgctgcattaactacttttatc
agtttagcaggtagctatttagtactcatgccaaataatcccaaatccggtggaatctca
agacgaattgagggaaacgatcgtgtcggattaaaagaaattctatctactttagaatta
cctgaaggaatgagtttaattattcgtaccgctgggctgggaaaatctatcgaggcatta
gaatgggatttaacttctcgtttacaacattggaaagccatcaaaaatactgcagaaaag
cactttgctccttttttaattcatcaggatagtaatgttattgtgcgtgcatttagagat
tatttacgcccagatataggagaaattctgattgataatcccaaaattatgaatttagct
aaagaacatataacttctttaggtcgcccagatttcattaaaaaaataaaattttataat
ggcgatattcctttatttagtcactaccagatagaatctcaaatagaatcagcgtttcaa
cgagaagtaagattgccatctggaggctccattgttatagatactaccgaagctctaaca
gcaatcgatattaattctgcacgctctactaaaggagcagacattgaagatacagctttt
cataccaatttagaagcaactgatgaaatagcgcgtcagttacgtcttcgtgatgtaggt
ggattaattgttatagatttcatagacatgactccaattcgacatcaacgagaaattgaa
aatagcctaaaaatagcggtgcatcaagatcgcgcccgcattcaaataggacatatttct
aaatttggtttattagaactatctagacaaagattaagtacgtcgcttggagaatcaagt
catcatatttgcccgcgttgcagcggaacaggcagcattcgtgacaatgaatctctttct
ctatcaattttacgtttaattgaagaagaagcactaaaggataatacctatgaagtacat
gctatcgttcctgtagctatcgcctcatatttactcaatgaaaaaagaaaagccattagc
gatatagaacaacgacaaaaaggagtacgtgccattatagtgccttacgaacaaatgaaa
actccaaattacgaaatacgacgtatacgtaaaggagaaacatacaataaaccaagctat
ttgttagcaacaaatcaagactatgaaataacccaatcatcaggagaaataatttcttca
aattacactgatactacagaaaaactacagtcaacaacaaacaccccatcaaatttagta
cctacttataataaaattttttattatgcaaatttcaaattgcaatttaaatcaaaaaga
gaaataccatggtttgataaaatcaaaaatcgttgccataaaatactcagtttatgtatc
acaagttataataatttaaaacaaatattatcaaaaataatcaccaaaaacatcaattgg
atatacactaaaattatatatcaacacaaaccgtctcagaccgtaaatcattatttaaaa
tcatatccgaatttttattctaaatacaacaataataataaaaaaaattatacccataat
acaaaaaataaaactgatttaaataatcgtaaaaaaataacagatttttttaataaaaat
aataataatactaagtctctatcaaaatttaatgacaatatttacaaatctgcacctact
ccctgctacactgatccaatacagtctcttgaaaaaataacgaaaaaaccatctatacag
agatataaaaaaagatatacgcacgacgttaaacatcagtacttaaataaggcacatcat
tcagaatattggatatggcgaaaacatcaccaatctgaacacaacttacatatgcaagta
aataaagaaccagtagcatctataaatatcaattcctacagaacatataatacaccagat
tcccgcatttttgacaaaaaaactaccgttgctgaagtaaattctaatactattgataat
tctaaaaatattcatacctctgatttgatgtcaaatactctacatattccaaaaaatacc
aatactatcatacattatccacattttaagcatagcactgctaaacagaataacaacata
tctcaacaaaacaacaataaccgtacacaactgattcggcgtatacgccgatcttctcgt
cattttcgtataaattttaaataccgattacaacaacgtcgagaaaaaattaccttaaaa
aaaatgcaataa
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