Blochmannia endosymbiont of Camponotus modoc: M9396_01350
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Entry
M9396_01350 CDS
T08359
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
bem
Blochmannia endosymbiont of Camponotus modoc
Pathway
bem03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bem00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
M9396_01350 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bem03021
]
M9396_01350 (rpoA)
03400 DNA repair and recombination proteins [BR:
bem03400
]
M9396_01350 (rpoA)
Enzymes [BR:
bem01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
M9396_01350 (rpoA)
Transcription machinery [BR:
bem03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
M9396_01350 (rpoA)
DNA repair and recombination proteins [BR:
bem03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
M9396_01350 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
Motif
Other DBs
NCBI-ProteinID:
URJ26554
LinkDB
All DBs
Position
complement(328040..329032)
Genome browser
AA seq
330 aa
AA seq
DB search
MQNSVIEFLKPRLVDIEQITETRSKVTLEPLERGFGHTLGNALRRILLSSMPGYAITEVE
IDGVLHEYSTKEGIQEDVLEILLNLKKLAIRIEGKDSVTLTLKKSGIGPVIAKDILYDSN
SVKIVTPNHIICHITDKNTSISMRIKVQRGRGYVPASSRFNSESDILPIGRLLLDACYSP
VERISYNVEAARVEQRTDLDKLIIDMETNGTIEPEEAIRRAATILSEQLEAFIDLRDIHQ
PEHKEEKPEFDPVLLRLVDDLELTVRSANCLKAESIHYIGDLVQRTEVELLKTPNLGKKS
LTEIKDVLASRGLSLGTRLENWPPTNILDN
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atgcagaattctgtaatagaatttttaaagccacgtttagtagatattgaacaaattact
gaaacacgctctaaagttactctggagccgttggaacgaggatttggtcatactttagga
aacgccctacgtcgtatcttactttcttcaatgcctggatatgctataacagaggttgaa
attgatggggtattacatgaatatagtacaaaagaaggtatacaagaagatgttttagag
attttacttaacttaaagaaattagctattagaattgaaggaaaagatagcgttacttta
actttaaaaaaatccggtattggacctgtaatcgcaaaggatattttatatgatagcaat
agcgtaaaaattgttacccctaatcatattatatgtcatataactgacaagaatacatct
attagcatgcgtattaaagtgcaacgcggacgaggttacgttccagcttcttccaggttt
aattctgaatcagatatcttaccaatcggtcgattattattagatgcatgctatagcccg
gtagaaaggatttcttataatgtagaagctgctcgcgttgagcaacgtacagatttagat
aaactcattattgatatggaaacgaatggaactatagaaccggaagaagcgattaggcgt
gcagcaacaattttatctgaacaacttgaagcatttattgatttaagggatatacatcaa
ccagaacataaagaagaaaaaccagaatttgatccagtcttattacgccttgttgatgac
ttagaactgactgtacgttctgctaattgtctaaaagcagaatctattcactatattgga
gatttagtacaacgaacagaagtagaattattaaaaacccctaatttgggaaaaaaatca
ttgacagagataaaagatgtattagcatctcgtggattgtctttaggaacacgtttagaa
aattggcctcctacgaatattttagataattaa
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