Blochmannia endosymbiont of Camponotus modoc: M9396_02180
Help
Entry
M9396_02180 CDS
T08359
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
bem
Blochmannia endosymbiont of Camponotus modoc
Brite
KEGG Orthology (KO) [BR:
bem00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
M9396_02180 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bem03021
]
M9396_02180 (rpoD)
Transcription machinery [BR:
bem03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
M9396_02180 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DUF2610
DnaD_N
Motif
Other DBs
NCBI-ProteinID:
URJ26140
LinkDB
All DBs
Position
514449..516284
Genome browser
AA seq
611 aa
AA seq
DB search
MEHNPQSQLKLLVTLGKEQGYLTFSEVNDHLPEEIVDPGQIENIIQMMNDMGIQVMEEAP
NSDEFLLIEHTNSTNDEEDATEAAVQALTNADSELGRTTDPVRMYMREMGTVELLTREGE
IDIAKRIEDGINQVQCSVSEYPEAITYLLEQYKRVETGETRLSDLITGFVDPDINENISI
HTNINHITAEVTTESIPDDDEEENNDENNIDPEIAYVKFTALRNQYEITRKTIKYNGRNH
IKSSKEILKLSEIFKQFRLVPKQFDYLVNNMRSMMERVRKQERLIMKLCVEISKMPKKNF
IALFSGNQTNKKWFNTALSMHTSWSEKLYKVDEDVQNSLSKLHQIEKETGLTIEQVKDIN
RRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYR
RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRVSRQMLQEIGHEPTPEE
LAERMLMSEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTNHDLPLDSATSDNLRT
ATHDILSGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPS
RSEILRSFLDD
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atggaacataacccacaatcacaacttaagttactcgtcacactcggcaaagaacaagga
tacttaactttttccgaagttaatgatcatttgccagaagaaatcgtagatcctggtcaa
atcgaaaatataatccaaatgatgaatgatatgggtattcaagtcatggaagaagcccct
aattctgacgagtttttattaatcgaacacactaattctactaatgatgaggaagatgca
acagaagcagctgtacaagcattgaccaacgctgactcagagttaggtagaacaactgat
ccagtacgaatgtatatgcgagaaatgggtactgtagaattattaacacgagaaggtgaa
atagatattgctaaaagaattgaagacggaataaatcaagtacaatgttcagtttctgaa
tatccagaagcaattacttatcttttagaacaatataaacgcgtagaaactggtgaaaca
cgcctttcagatttaattacaggttttgtagatcctgatataaatgaaaatatatcaata
cacacaaatatcaatcacataactgctgaagttacgactgaatcaatacctgatgacgat
gaagaagaaaataatgatgaaaataacattgatccagaaatagcctatgtaaaatttaca
gcactacgtaatcagtatgaaataacacgtaaaacgattaaatataatggaagaaatcac
attaaatcatcaaaagaaattttgaaactctctgaaatatttaaacaatttagattagtt
ccaaagcaatttgattatttagttaacaatatgcgctctatgatggaaagagtacgtaaa
caagaacgattaattatgaaattatgtgttgaaattagtaaaatgccaaaaaaaaatttc
atagcgttattttcaggaaaccaaactaataaaaaatggtttaatacagctttgtctatg
cacacatcatggtcagaaaaattatataaagttgatgaagatgtacagaatagtttatca
aaattacatcaaattgaaaaagaaacaggactaacaatagaacaagtgaaagatattaat
cgtcgtatgtctattggagaagctaaagctcgaagagctaaaaaagaaatggttgaagct
aatcttcgtttagttatatctattgccaaaaaatatacaaatagaggattacaattttta
gatttaatacaagaaggtaatattggtttaatgaaagccgtagataaatttgagtatcgt
cgtggttataaattttctacttacgctacttggtggattcgtcaagcaattactagatcg
atagccgatcaagcacgtactatccgaatcccagtccatatgatagaaactattaataaa
cttaaccgagtttctcgacaaatgctacaagaaataggacatgaaccaactccagaagaa
ctggcagagcgtatgcttatgtcagaagataaaattagaaaagtgttaaaaattgctaaa
gaacctatttctatggaaactcctataggagatgatgaagattctcatcttggagatttt
attgaagatactaatcatgatttacctttagattcagcaacttcagataacttacgtact
gctactcatgatatactttccggattgactccaagagaagctaaagtattgcgtatgcgg
tttggtattgatatgaatactgatcatactctagaagaagtaggtaaacaatttgatgta
actcgtgaacggattcgtcaaatagaggcaaaagctttaagaaagctacgtcatcctagt
cgatctgaaatattgcgaagctttttggatgattaa
DBGET
integrated database retrieval system
