Blochmannia endosymbiont of Camponotus modoc: M9396_02715
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Entry
M9396_02715 CDS
T08359
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
bem
Blochmannia endosymbiont of Camponotus modoc
Pathway
bem03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bem00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M9396_02715 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bem03021
]
M9396_02715 (rho)
03019 Messenger RNA biogenesis [BR:
bem03019
]
M9396_02715 (rho)
Transcription machinery [BR:
bem03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
M9396_02715 (rho)
Messenger RNA biogenesis [BR:
bem03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
M9396_02715 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA_22
S1CSD-TOTE-2
AAA_25
AAA
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
URJ26230
LinkDB
All DBs
Position
647575..648834
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AA seq
419 aa
AA seq
DB search
MNLTKLKNIPVSELVHLGESMGLENLARMRKQDIIFAIFKQHAKTGEDIFGDGVLEILQD
GFGFLRSSDSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNDVN
YDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP
KAGKTILLQNIAQSISHNHPDCVSIVLLIDERPEEVTEMQRLVHGEVIASTFDEPASRHV
QVSEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTIVPSSGKVLTGGVDANALHRPKRF
FGAARNMEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY
NRSGTRKEELLTTQDELQKIWILRKIIHPMSEIDAMEFMMNKLSMTKTNDEFFDMMKRC
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttacaaaattaaaaaacataccagtttctgaattagtacatctcggagaaagt
atgggtctggaaaatttagcacgtatgcgcaagcaagatattatctttgctatttttaaa
caacatgctaaaactggagaagatatttttggggatggtgtattagaaatattacaagac
ggttttgggtttcttagatctagtgatagctcttatcttgctggaccagatgatatttat
gtgtctccaagccagattcgtcgttttaatttacgtactggagatactatttctgggaaa
attagacctccaaaagaaggtgaacgttattttgcattgcttaaagtaaatgatgtaaat
tatgataaaccggaaaatgctcgtaataaaattttgtttgaaaatcttactccattacat
gccaattcacgattacgcatggaaagaggaaatggttctacggaagatttaaccgcgaga
gtattggacctagcatcacctattgggcgcggacagcgcggtttaattgtagcgcctcct
aaagccggaaaaactatacttcttcaaaatattgcacaaagcattagtcataatcatcca
gactgcgtatcaatagtacttttaatagatgaacgtccagaagaagttactgaaatgcaa
cgcttagtgcacggagaagtcattgcatctacttttgatgagccagcatctcgtcatgtt
caagtatctgaaatggtaattgagaaagctaagcgattagtagaacacaaaaaagatgtt
attattttgttagattccattactcgattagcaagagcctataatactatagtaccttca
tccggaaaagtgttgacaggaggggttgatgctaatgctttacatcgtccaaaacgcttt
ttcggagcggctcgtaatatggaagaaggaggaagcttaactattatagctactgcttta
atagatactggatcaaaaatggatgaagtaatttatgaagaatttaaaggaactggcaat
atggaactacatttatcaaggaaaatagctgaaaagcgtgttttcccggctattgattac
aatcgttctggaactaggaaagaagaactgttaactactcaagatgaactgcaaaaaata
tggattttacgaaaaattattcatccaatgagtgaaattgatgcaatggaattcatgatg
aataaattatctatgactaaaaccaatgatgaattctttgatatgatgaagcgctgctaa
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