Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus 757: BOBLI757_413
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Entry
BOBLI757_413 CDS
T03906
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ben
Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus 757
Pathway
ben03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ben00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BOBLI757_413 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ben03019
]
BOBLI757_413 (rne)
03009 Ribosome biogenesis [BR:
ben03009
]
BOBLI757_413 (rne)
Enzymes [BR:
ben01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BOBLI757_413 (rne)
Messenger RNA biogenesis [BR:
ben03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BOBLI757_413 (rne)
Ribosome biogenesis [BR:
ben03009
]
Prokaryotic type
rRNA processing factors
BOBLI757_413 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Tra1_central
Motif
Other DBs
NCBI-ProteinID:
AKC60569
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All DBs
Position
481781..483709
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AA seq
642 aa
AA seq
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MKRMLINATQQEELRVALVDGQRLYDLDIETLGHEQKKANIYKGTITRIEPSLEAAFVDY
GAERNGFLPLKEISREYFPIKISSYNNKYCIKDILQEGQEIIVQIDKEERGSKGAALTTF
ISLAGSYLVLMPNNPKAGGISRRIEGNDRTELKEILSSLKLPEGMGLIVRTAGIGKTMED
LEWDLTLRLKHWQTIKKIADNKTAPFLIYQESNVIIRAIRDYLRPDIGEILIDNPKVLNL
VKEHITSLGRPDFTNKIKLYTGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEAL
TAIDINSARSTKGMDIATTAFNTNLEAVDEIIRQMRLRDLGGLIVIDFIDMISIRHQREI
ENNLRELARQDRARIQIGRISRFGLLELSRQRLSPSLGESSHYICPRCGGTGNIRDNESL
SLSILRLIEEESLKENTCEVHAIVPVPIASFLLNEKRHAVNEIEKRQSGNVRTIIVPHDQ
MQTPNYAVKRIRKGEEATTPSYLLPKLHEIEIASQSTENLIAEHKNYERTKTSIYKMSYT
TPTINLNNSNKIIQQKKIYSKIKSCRISFKILVNKVKLIINYFNQILQKKYTKFPSSSFM
SKRKKNFKSNNANYTKYNKYYRYNQHCNQINNNNIQNKQKNN
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atgaagagaatgttaattaatgccactcaacaggaagaattacgtgtagctctggtagat
ggtcaacgtttatatgatttggatattgaaactctgggacatgaacaaaaaaaagctaac
atttacaaaggcacaataacacgtattgaacctagtttggaagcagcctttgtagattac
ggcgctgaacgtaatggatttctaccacttaaggaaatttcccgtgaatattttcctata
aaaatttcttcgtataacaataaatattgtattaaagatatcttacaagaaggacaagaa
attattgtacaaatagataaagaagaaagaggcagcaaaggtgcagcattaactacattt
ataagtttagctggtagttatttagttttaatgccaaataatcctaaagctggtggtatt
tcgcgtcgtatcgagggtaatgatagaactgaattaaaagaaattttatcttcattaaaa
ttacctgaaggtatgggattaattgttcgtaccgcaggaattggaaaaaccatggaagat
ttagaatgggacctcactttacgtttaaaacattggcaaacaataaaaaaaatagcggac
aataaaacagcaccttttttaatttatcaagaaagtaatgttattatacgtgctataaga
gattatttacgacctgatataggagaaattttaattgataatcctaaagtattaaatcta
gtaaaagaacatatcacttctttaggaagaccggattttactaataaaattaaattatat
actggtgaagttccattatttagtcattatcaaatagaatctcaaattgaatctgctttt
caacgtgaagtacgtttaccgtctggaggttccatagttatagataccacagaagcatta
acagcaatagatataaattctgctcgttctactaaaggaatggatattgcaacaacagca
tttaataccaatttagaagcagtagatgaaattattcgacaaatgagattacgtgattta
gggggtttaatagttattgattttattgatatgatatcaatacgacatcaacgcgaaata
gaaaataatttgcgtgaactagcacgacaagaccgagcgcgaattcaaataggacgtata
tctcgttttggattattagaactttccagacaaagacttagcccatcattgggagaatct
agtcattatatttgcccgcgttgtggtggtacaggaaatattcgagataatgaatctctt
tctctttccattttacgtttaattgaagaagaatctttaaaagaaaatacttgtgaagta
catgcaatcgtaccagtacctatagcttcattcttacttaatgaaaaacgacatgcagta
aatgaaatagaaaaacgccaaagtggtaatgtacgcacaataatagtaccgcatgatcaa
atgcaaactccaaattatgcggtaaaaagaattaggaaaggagaagaagctacaacacca
agttatttattacctaaattacatgaaatagagatcgcttctcaatccacagaaaattta
attgcggaacataaaaattatgaacgtactaaaacatcaatatataaaatgagttacaca
acacctactattaatctgaataattcaaataaaataatacaacaaaaaaaaatttattca
aaaataaaatcttgccgtatctcatttaagatattagtaaacaaggttaaattaatcata
aattatttcaatcaaatattacagaaaaaatataccaaatttccatcatcttcttttatg
tctaaaagaaaaaaaaattttaaatctaataatgcaaattatactaaatacaacaaatat
tatcgttacaatcaacattgtaatcaaataaataataataatatacaaaacaaacaaaaa
aataattga
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