Priestia filamentosa: BEH_00385
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Entry
BEH_00385 CDS
T03983
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
beo
Priestia filamentosa
Pathway
beo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
beo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BEH_00385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
beo03400
]
BEH_00385
Enzymes [BR:
beo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BEH_00385
DNA repair and recombination proteins [BR:
beo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BEH_00385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
RecG_dom3_C
MFD_D3
IstB_IS21
UB2H
AAA_22
Importin_rep_6
CompInhib_SCIN
Motif
Other DBs
NCBI-ProteinID:
AKO94909
UniProt:
A0A0H4KR97
LinkDB
All DBs
Position
65512..69051
Genome browser
AA seq
1179 aa
AA seq
DB search
MQGLKRHFEHHKEIEGILNGVQEGIKEQLVTGISGSARAVLMASLYEKEEGKRPLLVVTH
NLYQAQKVYDDLTNLLPEQDVFLYPVNDVLASEFGTASPELRAQRLEVLNFWNREEKGVV
VAPLQGILQLLPPKSVWNKNQLTFQVGVDIDVEYAIAKINELGYERASMVSTPGEFSVRG
GIIDIYPLTEENPVRIELFDTEVDSIRTFTAEEQRSVDKLESITIGPATELLLTEEQLIQ
GAKSLEAALSKTLKKVKDETVKEQLVEKVQYEIEQLKNKQIFDDVSKYFHLLYEEPASLL
DYLPENGAVFFDEITRVHEASEQLKKDEADWVTNQLMVGEFVHDIPLSHNMPTLLQKHKA
PFIYMSLFLKHVPNTSPQNIVNVSFKAMQQFHGQMNLFKGEVERWVKNNFTIVVLGPTLE
RVDKLESVLRDYDLDSIILKEDSQLIPGTIQIVEGDLQSGFELPMQKLVVITEEELFKKR
VKKSKRRQKLSNAERIKSYSELNVGDHVVHVNHGIGKYLGIETLEINGLHKDYLNIRYEG
TDKLYVPVEQIDQVQKYVGSEGKEPKLYKLGGNDWKKVKRKVEASVQDIADDLIKLYAER
EASKGYPFAPDSDMQRAFEASFPYQETEDQLRSIAEVKKDMERIRPMDRLLCGDVGYGKT
EVAIRAAFKAIHEGKQVAFLVPTTILAQQHYETIRERFQEYPINIGLLSRFRTRKQQQET
AKGLKSGVVDIVIGTHRLLSKDIKYKDLGLLIIDEEQRFGVTHKEKIKQLKANIDVLTLT
ATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEYNPPLVREAIERELARDGQVYFL
YNRVEDIERKAEEISTLVPDARVAYAHGKMNETELEAAVLSFLEGEYDVLVSTTIIETGV
DIPNVNTLIVHDADRMGLSQLYQLRGRVGRSNRVAYAYFTYRKDKALSEVAEQRLQAIKE
FTELGSGFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERQGSGEEEKV
DVEININLDAYIPDQYIVDGRMKIDMYKRFRGIESLEDLEDLKEEMIDRFGDYPAEVGYL
FKVAEMKVYAAENGVESVMQSKTEISILLTEKTSAEIDGQKLFQLGNEFGRMMGFGMEGN
RVKVVANINRLKEAEWLPMILKFVKNLKDVRKEKKVKSV
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
ttgcaaggattaaagagacacttcgagcatcataaagaaatcgaaggaattttaaatgga
gtccaagaaggaattaaagagcagcttgttacggggatctcgggttctgcacgtgcagta
ttgatggcaagtctctatgaaaaagaggaaggaaaacggcctctgttagtggtaacccat
aacttatatcaagcacagaaagtatacgatgatcttacaaatctgttacctgaacaagac
gtatttctctatcctgtaaacgacgtacttgcttcagaatttggtacggcaagtcctgaa
ttaagagcacagcgcttagaagtgttaaacttctggaacagagaagaaaaaggagttgtt
gttgctccattacaggggatattgcaacttcttccacctaagtctgtttggaataaaaat
cagcttacatttcaagttggtgtagacattgatgtagagtatgctattgcaaagattaac
gaacttggttatgaacgagcttcaatggtttcaacaccaggagagttcagcgtacgcgga
ggcattattgatatttaccctcttacagaagaaaatccagtcagaattgaattatttgat
accgaggtagattcaattcgaactttcacagctgaagagcaacgttcagtagataagcta
gagagcattacaattggccctgcaacagaactacttcttacagaagaacagctgattcaa
ggggcaaagtcgctagaagcagcgctttcgaaaactttaaagaaagtgaaagatgaaact
gtaaaagagcagcttgttgaaaaagttcaatatgaaattgaacaactaaaaaataagcag
atttttgatgatgtctcaaaatattttcaccttctttatgaagaaccagctagtttacta
gattacctacctgaaaatggtgctgtgttcttcgacgaaattacaagagtacatgaagca
tcagaacagttaaagaaagatgaagctgattgggttacaaatcagcttatggttggagaa
tttgtacatgacatcccactgtctcacaacatgccaactcttcttcaaaagcataaagca
ccatttatctatatgtcgctatttttgaagcatgttccaaatacaagtccccaaaacatt
gtaaatgtctcttttaaagcaatgcagcagtttcacggacagatgaatttgttcaaggga
gaagtggagcgttgggttaaaaacaactttacgattgttgtgcttggtcctacattggaa
cgagtagataagctggagtctgttcttcgtgactatgatcttgattctattattttgaaa
gaagattctcagcttattccaggcacaattcaaattgtagaaggtgacttacaatctgga
tttgagctcccaatgcagaagcttgttgtgattacagaagaagagttatttaagaaacgt
gttaaaaaatcaaagagacgtcaaaagctttcaaatgcagagcgaattaaaagttattca
gagcttaatgttggtgatcatgttgttcacgtaaatcacgggatcggtaaatatctaggc
attgaaacgctagaaatcaacgggcttcacaaagattatttgaacattcgatatgaaggt
acagataaactatatgtacctgttgaacagattgaccaagtacagaaatatgttggttct
gaaggtaaagagcctaaactctataaattgggcggtaacgactggaagaaagtgaagcgt
aaagtagaggcatctgttcaagatattgcagatgatcttattaagctttatgcagaacgc
gaagcaagtaagggatatccatttgctcctgatagtgatatgcaacgtgcatttgaggca
tcttttccatatcaagaaacagaagatcaactgcgctcaattgcggaagtgaaaaaggat
atggaacgcatccgtcctatggatcgtcttctttgtggagatgttggatacggaaagaca
gaagttgctataagagcagcattcaaagccattcatgaaggaaaacaagtggcttttctt
gtgccgactacaatactagctcagcagcactatgaaacaatccgtgaaagatttcaagaa
tatccaataaatattggtcttttaagccgttttagaacaagaaagcagcaacaagaaaca
gcaaaaggattaaaatcaggggttgtagatattgtaattggaacacatcgcttgctttct
aaagatattaagtataaggatttagggttgcttattattgatgaagaacagcgctttggt
gttacacataaggaaaaaataaaacagctaaaagctaatattgatgttctaacattgaca
gcaacgccaattccaagaacactgcatatgtcgatgcttggagttcgcgatttatctgtt
attgaaacacctcctgaaaaccgttttcctgtgcaaacttatgtgcttgaatataatcct
ccacttgtaagggaagcaattgaacgcgaacttgctagagatgggcaagtgtacttcctt
tataaccgtgtagaagatattgagcgtaaagcagaagaaatctcaacccttgttcctgat
gcacgtgttgcttatgcacacggtaagatgaacgaaacggagcttgaagcagctgtgtta
agtttcttagaaggagaatatgacgttttagtgagcacaactatcattgaaacgggtgtt
gatattccaaatgttaatacattgattgtacatgatgcagatcgtatgggcctttcacag
ctttatcagctacgtggacgtgttggtcgttcaaatcgagttgcatatgcttatttcaca
taccgtaaagataaagctctaagtgaagtagctgagcaaagactgcaagcaattaaagag
tttacagagcttggttctggatttaagattgcaatgcgtgatttatccattcgtggagca
gggaacttactaggagcccaacagcatggctttattgactctgttggttttgatttatac
tctcaaatgcttaaagaagcaattgaagagaggcaaggcagcggtgaagaagagaaagtg
gatgttgagattaatattaatcttgatgcctacattccagatcagtatattgtagacggt
agaatgaaaattgatatgtacaaacgattccgtggcattgaaagtctcgaagatcttgaa
gatttgaaagaagaaatgattgatcgctttggtgattatcctgctgaagtgggctactta
tttaaagttgctgaaatgaaagtgtacgcagcggagaatggagtagaatctgttatgcaa
tctaagacagaaatctctattctcctaactgagaagacaagtgctgagattgatggacag
aagctatttcagttaggaaatgagtttggacgaatgatggggtttggtatggaaggaaac
cgtgtcaaagttgtagcaaatattaaccgtctaaaagaagctgaatggcttccgatgatt
ttgaaattcgtaaaaaatctaaaagatgttcgaaaagaaaaaaaggtaaaatctgtctag
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integrated database retrieval system
