Bernardetia aquimarina: ACE193_24900
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Entry
ACE193_24900 CDS
T11706
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ber Bernardetia aquimarina
Pathway
ber03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ber00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACE193_24900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ber03019
]
ACE193_24900
Enzymes [BR:
ber01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ACE193_24900
Messenger RNA biogenesis [BR:
ber03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ACE193_24900
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Fe-ADH
UvrD-helicase
P-loop_SecA
AAA_22
ERCC3_RAD25_C
Fn3_Dep-1_5th
Motif
Other DBs
NCBI-ProteinID:
XHD14429
LinkDB
All DBs
Position
complement(5793551..5794945)
Genome browser
AA seq
464 aa
AA seq
DB search
MSDNSTKNNTTKSFADLGLSDELLQAVKKVGYTLPSPIQEKVIPFVLDRKDVLASAQTGT
GKTAGFTLPMLQLLTQDVKQRSKIRRRSLRCLILTPTRELAAQVFENVKEYSEFLDIRSA
VIFGGVNQNPQIRTLKNGVDVLVATPGRLLDLEGQKALSLADVEILVLDEADRMLDMGFL
HDIKRVIKLVPTKRQNLLFSATFSKEIKSLAGKILNNHVTVEATPENTTVEKINQTVYSV
NKTRKSDLIIKLIDEGEWEQVLVFTRTKHGANRLSDRMTKRGIQAAAIHGNKTQNARTKA
LQGFKDGSIRVLVATDIAARGLDIPLLPYVINYELPNVPEDYVHRIGRTGRAGAGGDAIS
LVSHDEIEFVENIEKLLNEKIEKKVVEGFEPTAPSKEDIEEAELAARQRSGRGGFNRNRE
RNRTSDSQGGSKGKSNSVNLGKAKSNTKGRRSNNPKFSGKGRGK
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacaatagtacaaaaaataatacgaccaaatcatttgctgatttaggtctttca
gatgagcttcttcaagctgtaaaaaaagtaggttatactttgccttcacctattcaagaa
aaagtaattccctttgttttagatagaaaagatgttttggcatcagcacaaactggaact
ggaaaaacagcagggtttacgcttcctatgctccaacttcttactcaagatgtaaagcag
cgttcgaagattagaagacgtagtttacgttgtcttatccttactcctactcgtgaactt
gcagcacaggttttcgaaaatgtaaaggaatatagcgaatttttagatattcgaagtgct
gttatttttggcggtgtcaatcaaaatccacaaatcagaacgctaaaaaatggtgttgat
gtcttggtagcaactcccggtcgtttgttggatttggaaggacaaaaagctctttcgctt
gccgatgtagagattttggtattggatgaagctgatagaatgctagatatgggatttttg
cacgatataaaacgagtaattaaacttgttcctaccaaaaggcaaaatcttcttttttcg
gctactttctctaaagaaataaaatctttagcaggaaaaatattaaataatcacgtaacc
gtagaagcaactccagaaaataccaccgtagaaaaaatcaatcaaactgtttatagtgta
aataaaacacgaaaatcagatttgattataaaattgattgatgagggagaatgggaacag
gttttggttttcactcgtacaaaacatggtgcaaaccgtttgagtgatagaatgactaaa
agaggaattcaagcagcagccatccatggaaacaaaactcaaaatgcacgtacaaaagct
ctacaaggctttaaagatggttctattcgtgttttggtagcgacagatattgcagcaaga
ggtttagacattccacttttgccgtatgtgattaattacgaattaccaaatgttccagaa
gattatgtacatagaattggtcgtacaggtcgtgcaggtgcaggaggagatgctatttcg
ttagtttctcatgacgaaattgaatttgtagaaaacattgaaaaacttctcaacgaaaaa
attgagaaaaaagtagtagaaggttttgaacctactgcaccttcaaaagaagacatcgaa
gaagctgaattggcagcacgccaacgaagtggaagaggtggttttaatagaaacagagaa
agaaatcgtacttctgattctcaaggaggaagtaaagggaaatctaattctgtaaatttg
ggtaaagcaaaatcaaatacgaaaggacgtaggagtaataatccaaaatttagtggtaaa
ggaagaggcaagtaa
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