Pseudobdellovibrio exovorus: A11Q_1099
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Entry
A11Q_1099 CDS
T02492
Name
(GenBank) hypothetical protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bex
Pseudobdellovibrio exovorus
Pathway
bex03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bex00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A11Q_1099
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bex03019
]
A11Q_1099
03009 Ribosome biogenesis [BR:
bex03009
]
A11Q_1099
Enzymes [BR:
bex01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
A11Q_1099
Messenger RNA biogenesis [BR:
bex03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A11Q_1099
Ribosome biogenesis [BR:
bex03009
]
Prokaryotic type
rRNA helicases
A11Q_1099
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
SNF2-rel_dom
Cas3-like_C_2
DUF6852
ERCC3_RAD25_C
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
AGH95315
UniProt:
M4VA26
LinkDB
All DBs
Position
1120379..1122244
Genome browser
AA seq
621 aa
AA seq
DB search
MQEQMDSSSIEEVKSKKSNPEVEAADIEAQEESENIFATWGLSKEVLRSLAELNFTQPTP
IQKQAIPVLLGREKDFVGLAATGTGKTGAFGIPLVETIDAESKSVQALVMCPTRELATQV
EAQLQKMAKWKGLSTLTVFGGSSYDRQITALKRGVQIVVGTPGRLCDLIDRKVLKLKDVQ
TLVLDEADEMISMGFQDDLEKILEAIGDSEDKRKWLFSATMSPEIRRVVSRYLPDYDKIE
IHKEDSQKPQIEQIYYTIYPDRKLQMLSAVLYMNPEFYGLVFCQTKREVTEITDWLKRKS
FKVDCIHGDRPQRERDFILKDFRSGRVKILVATDVAARGLDINDLTHVINFSLPREVESY
VHRIGRTGRAGKKGLALSIVAPHEVKLLKRIQQVTKANLVKGTAPTNDELNVYRVRDVIN
GMNQVKDNELYHRAGKFLDRKMDELKEAFEFDFTVEEFLKRLVLSEHPDIFENRDTSMDF
VGDGVVPREMQAGGGRPSRSDDRYRSGGRGQGRGGDRYERNDRGGDRFDRGDRGGERRGR
SERFEGRSYDRGNDRNAERSHDRGDRAFGFGADKDKFRDRQQPSRQLNGFKSWNSDDDSN
RPRRRSTTGRPSEGRRSSSRD
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgcaagagcaaatggactcgtcgtctattgaggaagttaaatctaaaaaatcaaatcca
gaagtggaagcagcagatatcgaggctcaagaagagtctgaaaatatctttgctacatgg
ggtctgtctaaagaggttttacgttctttagctgagttaaatttcactcaaccaacacct
attcaaaaacaagctatcccagttttattggggcgcgaaaaagacttcgttggcttagcg
gcgacaggaactggaaaaacaggggccttcgggattccgttggtcgaaacaatcgatgct
gaaagtaagtctgttcaggcattggtgatgtgtccgacacgtgagttagctactcaagtg
gaagcgcaattacaaaaaatggcaaaatggaagggcctaagcacgctgacggtgtttggt
gggtcttcttatgatcgtcaaattacggccttgaaacgaggcgtacaaatcgttgtggga
actccaggtcgtctgtgtgatcttattgaccgcaaagttttaaaattaaaagatgttcag
actttagttttggacgaagctgacgagatgatctctatgggtttccaagacgatcttgag
aaaattttagaagccatcggagacagcgaagataaacgtaaatggttattctcagctaca
atgtcaccagagatcagacgtgtggtttctagatacttgccagattatgacaagattgaa
attcacaaagaagattctcaaaaacctcaaattgagcaaatttactacacgatctatcct
gatcgtaaattacaaatgttatctgcagttctttacatgaaccctgagttctatggtttg
gtgttctgtcagacaaaacgtgaagtaacagaaattacagactggttaaagcgcaaatct
ttcaaagtggattgcatccatggtgaccgcccacaaagagagcgtgactttatcttgaaa
gatttccgttcaggacgcgttaagatcttagtggcaacagatgtggctgcccgtggtttg
gatatcaatgacttaactcacgttatcaacttctctttaccacgcgaagtggaaagctat
gttcatcgtatcggccgtactggtcgtgcaggtaaaaaaggtttagctttatcaatcgtg
gcaccgcatgaagtgaagttattaaagcgtattcaacaagtaacgaaagcaaatcttgtt
aagggtacagcaccaacaaatgacgagctgaatgtttatcgcgtacgtgatgttattaat
ggtatgaaccaagttaaagacaatgagttatatcatcgcgcaggtaagttcttagaccgc
aaaatggacgaactaaaagaagctttcgagtttgattttacagtggaagagtttttaaaa
cgtcttgtgctttctgaacatccggatatttttgaaaatcgcgacacatctatggatttc
gtaggtgatggagttgttcctcgtgaaatgcaagctggtggcggacgcccatcgcgctct
gatgatcgctatcgcagtggtggtcgtggtcaaggccgtggcggtgatcgctatgagcgc
aatgatcgcggtggcgaccgttttgatcgcggagatcgcggcggtgaacgtcgtggccgt
agcgagcgctttgaaggtcgtagctatgacagaggtaatgatcgtaatgctgaacgcagt
catgaccgcggagaccgcgcttttgggtttggtgcagacaaggataagttccgtgatcgt
caacaaccaagtcgtcaattaaatggttttaaatcatggaattcagacgatgactcaaat
cgtcctcgtcgtcgtagcactacaggtcgtccttctgaaggacgtcgttcgtcttcacga
gactag
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