Pseudobdellovibrio exovorus: A11Q_1916
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Entry
A11Q_1916 CDS
T02492
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bex
Pseudobdellovibrio exovorus
Pathway
bex03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bex00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
A11Q_1916
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bex03021
]
A11Q_1916
03400 DNA repair and recombination proteins [BR:
bex03400
]
A11Q_1916
Enzymes [BR:
bex01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
A11Q_1916
Transcription machinery [BR:
bex03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
A11Q_1916
DNA repair and recombination proteins [BR:
bex03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
A11Q_1916
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AGH96132
UniProt:
M4V9R1
LinkDB
All DBs
Position
complement(1932806..1936912)
Genome browser
AA seq
1368 aa
AA seq
DB search
MRDLLNFFDKPKDPLSFDAVRISLASPEMIREWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRMKYRGVICEKCGVEVTQTKVRRERLGHIELSSPVAHIWFLRSL
PSRIGNLLNLSLKDVEKVLYCESYIVIDPMETTLEEGAVLSEEAYQAALNEFGPSFKAGM
GGESVREMLRKIDCEYLSRKLRMELKETKSEAGIKKLSKRLKVVEAFKGSSNKPEWMMLE
ALPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLQELNAPDIIIRNEKRMLQ
EAVDALLDNGRRGKTFTGPNKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LKLHQCGLPKKMALELFKPFVYNKLEEKGLATTIKQAKRLVDQETVEVWDILAEVVKEHP
VLLNRAPTLHRLGIQAFEPVLHEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSVEAQVEA
RVLMMSTNNILSPANGKPIINPSQDVVLGLYWMTRIRPGAKGTGKVFASVQEATYAYEAG
LVDIQAACKVKIKGKIEETSVGRAILSDAVPKEVPFASINTVMSKKAIAALIDTTFRHAG
AKATCILADQIMQLGFKYSTLAGLSISLDDMIIPESKAGMIADAEKHVEEIQQQYDEGLI
TDGERYNKVVDIWAQTSDKVAKEMMSQIEKQKFVVDGKEIVGPSFNPIYVMADSGARGSF
NQLRQLGGMRGLMAKPSGEIIETPITANFREGLTVLQYFISTHGARKGLADTALKTANSG
YLTRRLVDVAQDVVVSEIDCGTTEGLDIIPVYEAGEIIQGIGERILGRTPLHDIVDPTNN
TILVKANSEIDETAVKKIDDLGIEKVTIRSALTCEAKRGVCVKCYGRDLARGATVNLGET
VGIIAAQSIGEPGTQLTMRTFHLGGAASRSVEQSVHTSRYEGTLKLVNVQSVRNRNGKLT
VMNRNGQALVIDETGRERENFKLVYGTVLSYNEGDKVAKGATVAEWDPYSNPIISEVTAK
IQFQDIVEGVTMSEQVDPVTGFATKVITESKSSDNKPTVLLVDESGKVLNLPGREIPARY
MIPVGAQLLVTDAQDVHAGDVIAKMHRETSKTKDITGGLPRVAELFEARKPKEAAIISEI
DGYVTFGKDVKGKQRVIVTPEIGEQREYLIPKGKHVAVREGEFVRAGEALMDGPTNPHDV
LAVLGANALSAYLVNEVQEVYRLQGVGINDKHVEVIVRQMLRKVEVIDAGDTRFLSGEQV
ERTTFNAENERVLREGGQIATAKSLLLGITKVSLSTESWISAASFQETTKVLTEAAINSK
TDHLRGLKENIIMGRLIPAGTGLTSYKRWKVVVTEDEEMESAALPMGG
NT seq
4107 nt
NT seq
+upstream
nt +downstream
nt
gtgagagatttattaaattttttcgacaaaccaaaagatccactttcgtttgatgccgtt
agaatttcattggcttcgcctgaaatgatccgtgaatggtcattcggtgaagttaaaaaa
ccagaaacaatcaattaccgtacgttcaaacctgagcgtgacggtttgttctgtgctaaa
attttcggtccaatcaaagattatgaatgcctatgcggtaaatacaaacgtatgaaatac
cgcggtgttatctgtgaaaagtgtggcgttgaagttacacaaactaaagttcgtcgtgag
cgcttaggtcacatcgagctttcgtctccggtagcgcacatctggttcttaagatcattg
ccttcacgtatcggtaacttacttaacctttcattgaaagatgttgagaaggttctttac
tgtgaatcatacatcgtgattgatccgatggagacaacacttgaagaaggtgctgttctt
tctgaagaagcgtaccaagcagctcttaatgagttcggtccaagcttcaaagcgggtatg
ggcggcgagtctgtacgtgagatgttgcgtaaaattgactgcgagtacttgtctcgtaag
ttaagaatggaattgaaagaaacaaaatcagaagcgggtattaaaaaattatctaagcgt
ctgaaagtagttgaagcgttcaaaggttcttctaataagcccgaatggatgatgttagaa
gcgcttcctgtattgccacctgatttacgtccattggttccattggatggcggtcgtttc
gcgacttcagatctaaatgatctttatcgccgcgtaatcaatcgtaataatcgtttgaaa
cgtcttcaagagctgaacgctccggatatcatcatccgcaatgaaaaacgtatgttacaa
gaagcggttgatgcattattggataatggtcgtcgtggtaaaacatttactggtccgaat
aaacgtcctcttaaatctttaagtgacatgcttaaaggtaaacaaggtcgtttccgtcaa
aacttattgggtaaacgtgtggactactctggtcgttcggttattaccgttggaccaaca
ctgaaattacatcagtgcggtttacctaagaaaatggcgttagaacttttcaaaccattt
gtttacaacaaattggaagaaaaaggtttggcgactacaatcaagcaagcaaaacgctta
gtagatcaagaaactgtagaagtatgggatatcttggctgaagtggtaaaagagcatcca
gtattactgaatcgtgctcctactcttcacagactaggtatccaagctttcgaacctgta
ttacatgaaggtaaagcaatccaattgcatccgttagtgtgtactgcgttcaatgccgac
ttcgatggtgaccaaatggccgttcacgttccgttgtcagtagaagcgcaagtggaagct
cgcgtgttgatgatgtcgacgaacaacatcttgtctccagccaatggtaaaccaatcatc
aatccatctcaggacgttgtcttgggattgtactggatgactcgtatccgcccaggtgct
aaaggcacgggtaaagtattcgcatctgttcaagaggcgacatacgcatacgaagcaggt
ttggttgatattcaagcggcttgtaaagttaaaattaaaggtaaaatcgaagagacttct
gtaggtcgcgctattctttctgacgctgttcctaaagaggtgccattcgcgtctatcaat
acagtgatgagtaaaaaagcgattgctgcattgatcgatacaactttccgtcacgcaggt
gcgaaagcaacttgtatcttagctgaccagatcatgcagttgggtttcaaatactcaaca
ttagcaggtctttcgatttcattggatgacatgatcatccctgaatcaaaagcgggtatg
attgccgatgctgaaaagcatgttgaagaaattcaacagcaatacgatgaaggtttgatt
acagatggtgagcgctacaataaggtagtggatatctgggcacaaacttcagacaaagtt
gctaaagagatgatgagtcagatcgaaaagcaaaaattcgttgttgatggcaaagaaatc
gtaggcccttcattcaatcctatctatgtcatggctgactcgggagcccgtggttccttc
aatcagttgcgtcagttgggtggtatgcgtggtctaatggcgaaaccttctggtgagatc
atcgagactccgatcacggcgaatttccgtgaaggtttaacggttcttcagtacttcatt
tcaactcacggtgcgcgtaaaggtttggccgataccgctcttaaaactgcgaactcaggt
tacctgactcgtcgtttagttgacgtagctcaagacgtagttgtttctgaaatcgactgc
ggaacgactgaaggcttagatatcattcctgtatacgaagctggtgaaatcattcaaggt
atcggcgagcgtattttaggtcgtacgccgttacatgatatcgttgatccaactaacaac
actatcttggttaaagcgaatagcgaaatcgatgaaactgctgttaagaaaatcgatgat
ttaggtatcgaaaaagtaaccatccgttcagctttaacttgtgaagctaaacgtggtgtt
tgtgtgaaatgttatggccgtgatttagctcgtggtgcgactgttaacttaggtgaaaca
gttggtattattgcggctcaatctatcggtgagccgggtactcagttaacgatgagaacg
ttccacttaggtggtgcggcatctcgttcagttgagcaatcagttcatacatctcgttac
gaaggtactttaaaacttgttaacgttcagtctgttagaaaccgcaacggtaaattgaca
gtgatgaatcgtaacggacaggctttagttatcgacgaaacaggtcgtgagcgtgagaac
tttaaattagtttacggtactgtattaagctacaacgaaggcgacaaagtggctaaaggc
gcaactgttgctgagtgggatccatattctaatccgattatctctgaggtaacggctaag
attcaattccaagatatcgttgaaggtgtgacgatgtcagagcaggttgaccctgttact
ggtttcgctactaaagttattacagagtcaaaatcttctgataacaaaccgacagtattg
ttggttgatgagagtggaaaagtattgaacttgccaggtcgtgagatcccagctcgttat
atgattccagttggagctcagttgttagtgactgacgcacaagatgtacatgccggtgac
gttattgcgaaaatgcatcgtgaaacatctaaaacaaaagatatcacgggtggtcttccg
cgtgttgctgagttattcgaagcacgtaaacctaaagaagctgctatcatctctgaaatc
gatggttatgtaactttcggtaaagacgtaaaaggtaaacaacgtgtaatcgttactcct
gaaatcggtgagcaacgtgaatacttgattcctaaaggtaaacacgtagcggtacgtgag
ggtgagtttgtaagagccggtgaggcgcttatggatggaccaacgaatccgcatgacgta
ttagcggtattgggtgctaacgcattgtcagcgtacttagtgaacgaagttcaagaagtt
taccgcttgcaaggtgtgggtatcaatgacaagcacgttgaagtcatcgttcgtcaaatg
ttacgtaaagttgaagttattgacgctggagacactcgcttcttatctggtgaacaggta
gagcgcacaactttcaatgctgaaaatgaacgtgtattaagagaaggcggacaaatcgca
acagcgaaatcgctactacttggtatcacaaaagtttcattgagcactgaaagctggatt
tcagcggcatctttccaagaaacgacaaaagttttaacggaagctgcaatcaactcaaaa
actgaccacttacgtggcctaaaagaaaacatcatcatgggtcgcttaatccctgcggga
acaggtctaacgtcttataaacgttggaaagttgttgtgactgaggatgaagagatggaa
tcagcagcattgccaatgggtggctag
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