Pseudobdellovibrio exovorus: A11Q_1969
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Entry
A11Q_1969 CDS
T02492
Name
(GenBank) HD-hydrolase domain-containing protein
KO
K03698
3'-5' exoribonuclease [EC:3.1.-.-]
Organism
bex
Pseudobdellovibrio exovorus
Brite
KEGG Orthology (KO) [BR:
bex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bex03019
]
A11Q_1969
Messenger RNA biogenesis [BR:
bex03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
A11Q_1969
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GFIT
Motif
Pfam:
HD
tRNA_anti-codon
HDOD
TraI_2
GSCFA
Cas3_HD
Motif
Other DBs
NCBI-ProteinID:
AGH96185
UniProt:
M4VCH6
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Position
complement(1994527..1995504)
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AA seq
325 aa
AA seq
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MQQHTSIKLLNDKEPITDRVFLVKDKVKGTGKNGRAFLSLLIGDKSGHIDARVWDRVDEI
SDLFDIGDLISVKGLVQVYQGRKQIIVHKLEKADQNQFKKEDFLLEDVKIDVHALFAEMM
SIVSTVQSPPIRQILTDSLQDDEIKELLLKAPAAKSIHHAKRGGLLEHIVSICKMMKLVA
SHYNYLNEDLLIFGAIFHDIGKVWELEINREQIQYSHKGRLLGHMQLACELIDRKSQRIL
GFPEDLREILKHIVLSHHGKLEYGSPVRPYIMEAFVVASIDELDSKMDTMFGFIKDERET
GDSWSRYSEHFERYFYLQDLKGRWT
NT seq
978 nt
NT seq
+upstream
nt +downstream
nt
atgcaacaacacacttcaattaaacttctaaacgataaagagcccattacggatcgtgtt
tttcttgtgaaagacaaagtcaaaggcactggcaaaaatggccgcgcttttttaagttta
ctgataggtgataaaagtggccatatcgatgcgcgtgtatgggatcgtgtcgacgaaatt
tcggacttatttgatataggtgatttaatttctgtaaaaggtttggtgcaagtatatcaa
gggcgtaagcagattattgtacacaaacttgaaaaagcagatcagaaccaattcaaaaaa
gaagatttccttttagaagatgttaaaattgatgtccacgcgctatttgccgagatgatg
tcgattgtttccactgtacaatctccacctatacgtcaaattctgacggatagcttacaa
gatgatgaaatcaaagagttgttattaaaggctcccgctgcgaaatctattcaccacgct
aaacgcggtggtttattagagcatatcgtttcgatctgtaagatgatgaaactagtcgcc
tcgcactacaactatctgaacgaagatctattgattttcggagctatttttcatgatatt
ggtaaagtttgggagctcgaaatcaatcgcgagcaaattcagtattcgcataagggaaga
ttacttgggcacatgcaacttgcgtgtgagttaattgatcgtaaatctcaacgcattttg
ggctttccagaagatctgcgagagatcttaaagcacattgtcttgtcacatcatggtaaa
cttgaatatgggtctccggtgcgtccctatattatggaggcctttgtggtggcgtctatt
gatgagttggactctaaaatggacactatgttcggttttattaaggatgaacgtgaaacg
ggtgactcatggtcacgttacagcgaacactttgagaggtatttttatctacaagatctc
aaaggacgttggacgtaa
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