Pseudobdellovibrio exovorus: A11Q_2602
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Entry
A11Q_2602 CDS
T02492
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bex
Pseudobdellovibrio exovorus
Pathway
bex03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bex00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
A11Q_2602
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bex03400
]
A11Q_2602
Enzymes [BR:
bex01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A11Q_2602
DNA repair and recombination proteins [BR:
bex03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
A11Q_2602
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
T1R_D3-like
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
AGH96818
UniProt:
M4VC53
LinkDB
All DBs
Position
2635525..2639076
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AA seq
1183 aa
AA seq
DB search
MRNYSEKMANKWQVSSTRLEDFIQRGLEKNKRLFNILGASSGVAASYFLSQSLSKEIKGL
PQVVVVSGLSQALAFQQELMFFSDQLRTHILYPWDISPFSGLFPSPEVRRSRASFLYWSA
KAQKNDIFIVPIAALMQLTAPFYNFNQRCRKLIAGDELPTDLAQYLNSLGYQSAPIVEDV
GQYSIRGGIVDIYSPAEKQPVRLELFGDQIESLRYFSVVDQRSLNETKELHLVPTYEFEL
SDENIEDIIKNLRADFKRREVTPTEAEEAVRSISLKNYFAGCELLLPYCYKSLSSVLDHF
SSDLNVFILDPSEVSRAADEFQQEIESDYRNNLNNPSVLFCPEPERIVQSYEKIPWSSDS
RFFNFSNLAFVEDERADEERITYSSLPLTEFSLLAQNLTPASDAWINAAKPKITTWLNSG
FKIFIAAKNHTQIDRLKTLLQKMELNFDLATEDEYLWDTWIENKTTITVVPRLFSETCLL
SEEKLVVLRSDDFFGKKQRATTSANAYEQFSSKAKSLAFGDLKPNDMVVHVKHGIGLYEG
LKIMNIGGVESEFIQIAYKDKDKLYLPVYRVGQLQKFSGSAAQTGLLDKLGGTAWEKTKI
KVKAHLRDIAAELLQLYAKRSELTRPPLPVDEIAYNQFEKGFPYEETDDQLRAITDIQKD
FTSGKPMDRLVCGDVGFGKTEVSMRAAFQAVHNRKQVAVLAPTTVLTFQHLETFRKRFAG
WNFEIRSLNRFVSTADQKKTLADLKEGKVDILIGTHRLLSKDVAFRNLGLLIIDEEQKFG
VIHKEKIKKMKTEVDTLTLSATPIPRTLNMSFTGMRDLSIINTAPVDRVPTRTFISKFDT
ELIRKGIQSEIARGGQVYFIHNRVQSIYGLADELRKIVPDARMRVAHGQMGEEELESAML
AFFNHEIDVLICTTIVESGMDVPRANTMFIDQAHMYGLSQLYQLRGRVGRSKARAFCYLL
LPKDKRIEKDAQERLKVIQENSALGSGIRIAQYDLELRGAGNILGDDQSGHVNSVGYELY
MDLLNEALAEAKGEPLADRDLDPEINLRVPALIPDAYISDIRIRLSYYKALSEISSHEEL
DRIEEELKDQFGPIPEPVVNLMGLMLIRKQCKDLGVRDISAGAKNISLIFTEKTKLKPET
AIQLAMRENKKYSITPDQRLNIRMNNITWSNVYEELNYLLTLI
NT seq
3552 nt
NT seq
+upstream
nt +downstream
nt
atgcggaattactctgaaaaaatggcaaataagtggcaagtaagttccacgcgacttgaa
gacttcattcaacgtggacttgaaaaaaacaaaagactgttcaacattttgggcgcttct
tcaggcgttgctgcttcttattttttgtctcaatctttatctaaagaaattaagggcttg
ccgcaagttgttgttgtttctggtttatcacaggccttagcttttcagcaggaattgatg
ttcttttcggatcaactgcgtacacacatcctgtatccttgggatatttcgcctttttct
gggctttttccatctccggaagttcggcgttcacgcgcgagctttctgtattggagcgcc
aaagctcaaaaaaacgacatttttattgtccctattgccgccttaatgcagctaacggct
ccgttttataatttcaatcagcgctgccgtaaactgattgcaggtgacgagctgcctaca
gatctagcacaatacctcaactccttaggttatcagtcggctccaattgtagaagatgtc
gggcagtacagtattcgcggtggcatcgtggatatttactcaccagcagaaaagcagccc
gttcgcttagagcttttcggagatcagatcgaatcactgcgctatttctcggtggtggat
cagcgcagtttaaatgaaaccaaagagctgcatctagttcccacttacgagttcgagctt
tctgacgaaaacatcgaagatatcattaaaaacttacgcgccgactttaagcgccgtgaa
gtcacaccgaccgaagccgaagaggctgttcgttctatttctttgaaaaactatttcgct
ggctgtgaacttcttttgccttattgctataagtccttgtcttctgtgctggatcatttc
agttcggacttaaatgtttttattttagatccctctgaagtttcccgcgcggcggatgag
ttccaacaggaaatcgaaagcgattatcgtaacaacttaaacaatccctccgttctattt
tgcccagagccagaacgcattgttcaaagttacgaaaaaattccgtggtcttctgactca
cgcttttttaatttttcaaacttagcttttgttgaagacgagcgggccgacgaagagcgc
atcacctattcgtctttacctttaactgagttttccttgctagcgcagaatttgactccg
gcttcagacgcatggattaatgcagctaaaccaaaaatcaccacatggttgaattctggt
tttaaaatttttattgccgccaaaaatcacacgcagattgatcgcctgaaaactctattg
caaaaaatggagcttaacttcgatctggccaccgaagatgaatatctttgggacacatgg
attgaaaacaaaactactatcacggttgttccccgcctgttttcagaaacatgcctactg
tcagaagaaaagttagttgttttacgcagtgatgatttcttcggaaaaaaacagcgcgcc
actacatctgccaatgcctacgagcagttttcttctaaagcgaaaagtctggctttcggt
gatttaaaaccgaacgacatggtcgtgcacgtcaagcacggcatcggcctatacgaaggc
ttaaaaatcatgaatatcggcggagtcgaatccgaatttattcagatcgcctacaaagat
aaagacaagttgtatctgccagtctaccgcgtgggccagctccaaaaattttcaggctca
gcagcacagaccggtttacttgataagctgggcggcaccgcttgggaaaaaactaaaatc
aaagttaaagctcatttgcgtgatatcgccgctgagttgttacagctttatgctaaacgt
agcgagctgactcgaccgccgctgcccgtagatgaaatcgcttacaaccagtttgaaaaa
ggtttcccctacgaagaaaccgacgatcaactgcgcgctattaccgatattcaaaaagac
ttcacctcgggtaaacctatggatcgcttggtgtgcggtgatgtgggctttggtaaaacc
gaagtttctatgcgcgcggcctttcaggctgttcacaaccgcaagcaagtggcggtgctg
gctccgacgacagttttaacctttcagcacttagaaacgttccgcaaacgttttgccgga
tggaactttgaaatccgctcactcaatcgcttcgttagcactgctgaccaaaagaaaacc
cttgctgatttaaaagagggaaaagttgatattctgatcggcacccatcgtctgttaagc
aaagatgtcgctttccgtaaccttggccttttgattatcgacgaagagcaaaagttcgga
gtaattcataaagaaaaaattaaaaagatgaagaccgaagtcgacacgttaactttatcc
gcgactccgattccgcgaacattgaatatgagcttcacgggtatgcgcgatctttcgatc
attaacacggctcccgtcgatcgcgttcctacgcgtacttttatttccaagttcgatacg
gaattaatccgcaaaggcattcagtcagaaatcgcacgtggtgggcaggtttattttatc
cacaaccgcgtacaaagcatttacggcctagcagacgagcttcgcaaaatcgtacctgat
gctcgcatgcgtgtggctcacggacaaatgggtgaagaagagttagagtccgcaatgctc
gctttcttcaatcatgaaatagatgtattaatttgtacgaccattgtggaatccggcatg
gatgttccacgtgcgaataccatgtttattgatcaggcccacatgtacggcctgtcacag
ctttatcaactgcgtggtcgcgtgggacgcagtaaagctcgcgccttctgttatctgctt
ttaccaaaagacaaacgtatcgaaaaagatgcgcaagagcgcctgaaagtgattcaggaa
aactcagctttggggtcaggtatccgcattgcccaatacgacttagaactgcgcggagcc
ggaaatattttaggtgacgatcagtccggacatgtgaactcagtcggctatgaactttat
atggatttacttaatgaagccttagctgaagctaaaggtgagcctttggcagatcgcgat
ttagatccggaaattaacttgcgtgtaccagctctgattccagacgcctatatttcagat
atccgcattcgcttaagttattacaaagctttgtctgaaatttcatcccatgaagaatta
gatcgcattgaagaagagctaaaagatcagttcggaccaattcctgagccggttgtgaac
ctgatgggtttgatgctgattcgtaaacagtgtaaagatttaggtgtgcgcgatatcagc
gccggagctaaaaatatctcgcttatcttcactgaaaaaacaaagttaaaaccagaaaca
gccattcagcttgctatgcgtgaaaacaaaaagtattcgatcactccggatcagcgcctg
aatatccgcatgaataacatcacttggtcgaatgtgtacgaagagctgaattacttactg
acgttgatttaa
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