Bartonella elizabethae: NCTC12898_00596
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Entry
NCTC12898_00596 CDS
T06159
Symbol
dnaE1
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
bez
Bartonella elizabethae
Pathway
bez03030
DNA replication
bez03430
Mismatch repair
bez03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bez00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NCTC12898_00596 (dnaE1)
03430 Mismatch repair
NCTC12898_00596 (dnaE1)
03440 Homologous recombination
NCTC12898_00596 (dnaE1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bez03032
]
NCTC12898_00596 (dnaE1)
03400 DNA repair and recombination proteins [BR:
bez03400
]
NCTC12898_00596 (dnaE1)
Enzymes [BR:
bez01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NCTC12898_00596 (dnaE1)
DNA replication proteins [BR:
bez03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
NCTC12898_00596 (dnaE1)
DNA repair and recombination proteins [BR:
bez03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
NCTC12898_00596 (dnaE1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
VEJ41180
LinkDB
All DBs
Position
1:705780..709268
Genome browser
AA seq
1162 aa
AA seq
DB search
MIKDKNKLQEDKNSLPRFIHLRVHSAYSLLEGALKIPQIIQQAISDHAPAVAITDTNNLF
GALEFSQYCLSHGVQPIIGCQITVDFCDKNDHSRLVKGRNASDFCSVVLLAASKTGYAHL
VRLVSRAYLDKCDTDPPHIKADWLAAHSEGIIALTGGKGGPINLSLAEEKKERALERLIY
LKKTFADRLYVELQRHGSYDRGVEADLIELAYAHEVPLVATNEAFFLKREGYEAHDALMA
VSEGQIVSNPDRKRVTPDHYLKSQDEMVALFSDLPEALENSVEIALRCHIATPLRKPILP
RFIEQSTNSETTLEAEDSELLNQAKAGLEMRLKTIGLAVGYTIADYEQRLDYEISVITRM
QFSGYFLIVSDFIKWAKIHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPD
RVSMPDFDIDFCQERREEVIQYVQKKYGRDQVAQIITFGKLQARAVLRDVGRVLEVPYRQ
VDYLTKLIPATPGSQVELADAIKDEPKFEEEKKKDPVVGRTLDIALQLEGLYRHASTHAA
GIVIGDRPLWELVPMYRDPRSDMPVTQFNMKYVEQAGLVKFDFLGLKTLTVLKMAVDFVA
RQGNKIDLSNIPLNDEATYAMMARGETVGVFQVESSGMRKALIGMKPDRIEDIIALVALY
RPGPMENIPTYNARKHGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLAGYSLGEA
DLLRRAMGKKIHAEMQKQRTRFVNGAVAGGVDKEQADIIFDLLAKFADYGFNKSHAAAYA
IVSYQTAYMKANYPVEFLAASMTHDMTNTDKLNDFRREALRLGIEVIAPSIQTSHRVFEV
GENCIYYSLAAIKGVGETVVDHIVACRGNKIFKNLEDFCARVDPRIVNKRAMESLVYAGA
FDCFNIAREVLLANLGTLHARAQRILDDNSSGQFDIFGMEGGLKEPLILSQTTPWLLAEK
LYREFQAIGFYFSAHPLDEYQAILAKKRVQTWSHFANAVKGGATAARLAGTVVAKNLRKT
KSGKKMGIIHFSDTSGQYEAVLFSEALSDYEEMLEPGKSFIITVSAENRSEGVSLRIETI
QSLEKEALQQHKMMRLFIKTVEMLPQIEQNLNLGGNGEVGLILIQENGLREVEIALPKRY
KVNSHVANAMKLIQGVVDVELS
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
gtgatcaaagataaaaataaactgcaagaggacaaaaattctcttcctcgctttattcat
ttgagagtgcattcagcttattccttgcttgaaggggctttaaaaatcccacaaattatt
caacaggcgatttcagatcatgcaccagcggttgctattaccgataccaataatttattt
ggggctttggaattttctcagtattgtctttctcatggggttcaacctattattggttgt
cagattaccgttgatttttgtgataaaaatgatcattcacgtttggttaaaggacggaat
gcttctgatttttgttctgtcgttctgttggctgctagcaaaaccggttatgctcatttg
gttcgtcttgtaagccgtgcttatcttgataaatgtgatactgatcctcctcatattaaa
gctgattggttagcggcacacagtgaaggcatcattgctttaacgggcggcaagggagga
cctattaatctttccttggcagaagaaaaaaaagaacgcgcccttgagcgcttaatttat
ttgaaaaaaacttttgctgatcgtctttatgtggaattacaacggcatggctcttatgac
cgtggggtagaagcagatcttattgaattggcttatgcgcatgaagttcctcttgttgca
acgaatgaagctttttttctgaagagagaggggtatgaagcgcatgatgcattaatggct
gtttcagaagggcaaatcgtctctaatcctgatcgcaaaagggtgacgccagatcattac
ttgaagtcacaagatgaaatggttgcattgttttctgatctgccagaagctttagaaaat
agtgttgaaattgcattgcgttgtcatattgccacgcctcttcgaaaaccgatattgcct
cgttttatagaacaatctactaattcagaaactactttagaagcagaagatagtgaattg
ttaaatcaagctaaagctggtttagaaatgcgacttaaaacgattggattggctgtaggg
tatacgatcgcagattatgaacagcggcttgattatgagatctccgttattacgcgtatg
caattttctggatattttcttatcgtttcagatttcataaaatgggcgaaaattcatgat
attcctgttggtccagggcggggttctggtgctggttcacttgttgcttatgcattgacg
attaccgatgttgatccattgcgtttttctcttctctttgaacgttttctcaatccagac
cgcgtttcgatgccagattttgatattgacttttgtcaagagcggcgtgaagaagttatt
caatatgttcaaaaaaaatatggacgtgatcaagttgctcaaattattacctttggtaag
ttacaagctcgtgcggttttgcgtgatgtagggcgtgttttagaagttccttatcgtcag
gtggattatcttacaaaactaattcctgccacgccaggaagtcaggtagaattagcggat
gcgattaaggatgaacctaaatttgaagaagaaaagaaaaaagatcccgttgttggacgc
acattagatatagcacttcagttagagggactttatcgtcacgcttccactcatgctgcg
gggattgttattggagatcgtccactttgggagcttgtcccgatgtatcgcgatcctcgt
tctgatatgcctgttacgcaatttaatatgaaatatgttgaacaggctgggctggtaaag
tttgattttcttgggttaaaaacgcttactgttttgaaaatggccgttgattttgttgct
agacaagggaacaaaatagatttgtcaaatatccctctgaatgatgaagcaacctacgct
atgatggcacgtggtgaaacggttggcgtgtttcaggtggaaagttctggtatgcgcaag
gcgctgattggaatgaagccagaccgtattgaagatattattgcgctggttgcgctttat
cgtcccggtccaatggagaatattccaacctataatgcacgcaaacacggagaagaggaa
atagcttctattcatcctaaaatagatcatctgattaaagaaacacaaggtgttatagtc
tatcaagaacaggtaatgcagattgctcaggtgctggctggttattcgcttggagaagct
gatttattacgtcgtgctatggggaaaaaaattcatgcagaaatgcaaaaacagcgtaca
cgttttgtcaatggagccgttgctggtggtgttgataaagagcaagcggatattattttt
gatcttttagcaaaatttgccgattatggttttaataaatcacacgctgctgcttatgca
attgtttcttatcaaacagcttatatgaaagctaattatcccgttgagtttttagctgct
tcaatgacgcatgatatgacaaatacggataagctcaatgattttcggcgtgaggcatta
aggctgggtattgaagttattgcaccttctatacaaacatctcatcgtgtttttgaggtt
ggtgagaactgtatttattattctcttgctgctattaaaggggtgggagaaacagttgtc
gatcatatcgttgcttgccgtgggaataagatttttaagaatctggaagatttttgtgca
cgtgttgatcctcgtattgttaataagcgtgcgatggaaagtttagtttatgctggtgct
tttgattgttttaatattgcgcgtgaagttttattagccaatcttggaacgcttcatgca
cgggcacagcgtattctcgatgacaattctagtgggcagtttgatatatttggaatggaa
ggcggattaaaagaaccattaattttatcccaaacgactccttggttactggctgagaaa
ctttatcgagaatttcaagcaataggcttttacttttcggctcatccattggatgagtat
caagctattctcgccaaaaaacgtgttcagacttggagtcattttgccaatgccgttaaa
gggggagcaacagctgcacggcttgctggaaccgttgtagcaaagaatctacgcaaaaca
aaatctggtaaaaaaatgggaattattcatttttctgatacaagcggacaatatgaggcc
gttctcttttctgaagcactttcggattatgaggagatgctagaacctggaaaatctttt
attattacggtaagtgcagaaaatcgctctgaaggggttagtttgcgaattgagacaatt
cagtctttggaaaaggaagcattacagcagcataaaatgatgcgtctttttataaaaaca
gttgagatgcttccacaaattgaacaaaatttaaatcttgggggaaatggagaggtcgga
cttattttaattcaagaaaatggattgcgagaagtcgaaatcgcacttccaaagcgatat
aaggtcaattcacatgtcgcaaatgctatgaaattaattcagggtgttgtcgatgtagaa
ttaagttaa
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