Brachybacterium faecium: Bfae_29160
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Entry
Bfae_29160 CDS
T00965
Name
(GenBank) predicted hydrolase of the metallo-beta-lactamase superfamily
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
bfa
Brachybacterium faecium
Pathway
bfa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bfa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Bfae_29160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bfa03019
]
Bfae_29160
Messenger RNA biogenesis [BR:
bfa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Bfae_29160
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Ortholog
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GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B
RNase_J_C
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
ACU86677
UniProt:
C7MA07
LinkDB
All DBs
Position
complement(3288738..3290423)
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AA seq
561 aa
AA seq
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MPSPRTKLTAPPRLPKNGMRITALGGLGEVGRNMTVFEHAGKLMIVDCGVLFPEEHQPGI
DVILPDFTSIRDRLDDIECIVLTHGHEDHIGGVPYLLKERADIPLIGSELTLAFITAKLK
EHRITPKTIQVEAGQKHKAGVFDLEFVAVNHSIPDSLAVFLRTRAGTVLHTGDFKMDQFP
LDGRITDLRAFARLGEEGVDLFLTDSTNAEVPGFTMSERDLNPAIDQVFTSSPRRIIVSS
FASHVHRIQQVLNAAHANGRKVAFVGRSMVRNMGIARDLEYLDIPKGLVVDFRKIQSMPD
HKVTLICTGSQGEPMAALARMANGDHQIQVGEGDTVLMASSLIPGNENAIYGIINKLTDL
GANIVHKGNAKVHVSGHASAGELVYCYNIVRPKNVMPVHGESKHLHANAELARRTGVPEK
NIVIAQDGVTVDLVAGQAKISGKVEAGLVYVDGQTIGTATEDTLAERRMLSGGGVVTVVA
LIDPKSYKPVEPVEFLSKGFVHDKRTFEGAEAQVNKALARAKSDNVEDIAEIEDIIVETV
GSYLRRTYRREPAVQAVVVDA
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgccctctccccgcaccaagctcaccgcacccccgcgcctgcccaagaacggcatgcgc
atcaccgcgctcggcggcctcggcgaggtcggccgcaacatgacggtgttcgagcacgcc
ggcaagctcatgatcgtcgactgcggcgtgctcttccccgaggagcaccagcccggcatc
gacgtgatcctgccggacttcacctccatccgggaccgcctggacgacatcgagtgcatc
gtgctcacgcacggccacgaggaccatatcggtggtgtcccgtacctgctcaaggagcgg
gccgacatcccgctgatcggttcagagctgactctcgcgttcatcaccgcgaagctcaag
gagcaccgcatcaccccgaagaccatccaggtcgaggcggggcagaagcacaaggcgggc
gtcttcgacctggagttcgtggcggtcaaccactcgatccccgacagcctcgcggtcttc
ctccgcacccgggccgggaccgtgctgcacacgggcgacttcaagatggaccagttcccg
ctggacggccgcatcaccgacctgcgcgccttcgcgcggctcggcgaggagggtgtggac
ctgttcctcaccgactccaccaacgcggaggtccccggcttcacgatgtcggagcgggat
ctgaacccggcgatcgatcaggtgttcacctcgtcgccgcggcggatcatcgtctccagc
ttcgccagccacgtgcaccgcatccagcaggtgctcaacgccgcccacgccaacggccgc
aaggtcgccttcgtgggccgctcgatggtgcgcaacatggggatcgcccgcgacctcgag
tacctggacatccccaagggcctggtcgtcgacttccgcaagatccagtcgatgccggac
cacaaggtcaccctgatctgcaccggctcgcagggtgagccgatggcggcgctggcccgc
atggccaacggcgatcaccagatccaggtgggcgagggcgacaccgtgctcatggcctcc
tcgctgatccccggcaacgagaacgcgatctacgggatcatcaacaagctcaccgatctg
ggcgcgaacatcgtccacaagggcaacgcgaaggtgcacgtctccggccacgcgagcgcc
ggcgagctggtgtactgctacaacatcgtgcgccccaagaacgtgatgccggtgcacggc
gagtccaagcatctgcacgccaacgccgagctggcccgccgcaccggcgtgccggagaag
aacatcgtcatcgcccaggacggcgtgaccgtggacctcgtggccggtcaggcgaagatc
tccggcaaggtcgaggcggggctggtgtacgtggacggccagaccatcggcactgccacc
gaggacaccctcgccgagcgccgcatgctctccggcggcggtgtggtcaccgtggtcgcg
ctgatcgacccgaagtcctacaagccggtcgagccggtcgagttcctctcgaagggcttc
gtgcacgacaagcgcaccttcgagggtgccgaggcccaggtgaacaaggcactggcgcgg
gcgaagtccgacaacgtcgaggacatcgccgagatcgaggacatcatcgtcgagacggtc
ggcagctacctgcgccgtacctaccgccgcgagcccgccgtccaggcggtcgtggtcgac
gcctga
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