Candidatus Borrelia fainii: BOFE_01620
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Entry
BOFE_01620 CDS
T09149
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
bfai
Candidatus Borrelia fainii
Pathway
bfai02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
bfai00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BOFE_01620 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bfai03021
]
BOFE_01620 (rpoD)
Transcription machinery [BR:
bfai03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BOFE_01620 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Sigma70_r4_2
Motif
Other DBs
NCBI-ProteinID:
BDU62622
UniProt:
A0ABM8DJ58
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All DBs
Position
complement(198709..200601)
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AA seq
630 aa
AA seq
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MNSVENKDLQVFKKKNSKIIKAILSHLGDKKAITFEDLSTFLSGDMLEPDNIDYIYGVLE
NEGISLVNEKMESDIYDIDEFDEADKLDSQCMVLDDSIQSDDEIDDKLDEFDDEILDKED
FSSGYIKSGLLKDSNSEDPIRLYLKEIGKEFLLTGDQEVELAKQMDSGESIIENILKNEG
LVIENYYNLVNAIYSRVDKEEFFKKEREREKDNNFDYYNKKKRITSFYKTSLRPFQERLI
KYIERKHSLYELGEDIFEESITSERLHIKEMLKSVPLYQEELRIFSDDYIDSASKIKDLK
RQQKSILDRLNIDKVRNLRILGRDLAIPERRERIEKSLNIREDLIKEQITEAQLAQKELE
RIEMYYEYPMDKIISMSEEILKGKQMMQHAKDQLIKANLRLVVSIAKKYANRGLHFFDLV
QEGNIGLIKAVEKFEYKRGFKFSTYATWWIRQAITRSISDQARTIRVPVHMIEQINRLNR
ETRYLVQVLGKDPTDEELSARLGWDLKKVKTVKNVSREPVSLETPIGEEEDSVLSDFIED
KAIKNPAKHTSFVVLQDQIRAVLGTLPEREQEVVKMRFGLEDGYSLTLEEVGLHFNVTRE
RIRQIESKALRRLKNPKKTQKLKDYLEDLN
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atgaatagtgtagagaataaagacttgcaggtttttaagaagaagaattcaaaaataata
aaggccatcttaagtcatttgggagacaaaaaagcaattacttttgaggatttatctact
tttttgtcaggggatatgttggaacctgacaatattgattatatttatggagtccttgag
aatgagggaataagcttggttaatgaaaagatggagtcagatatttatgatattgatgaa
tttgatgaggccgataaacttgatagtcaatgtatggtgttagacgattctattcaaagt
gatgatgaaattgatgataaattggatgaatttgatgatgaaattttagacaaagaagat
tttagttcaggatatattaagagtggtttattaaaagatagtaattctgaagatcctata
aggctttacttaaaggaaatagggaaagaatttttgttaactggggatcaagaggttgag
cttgcaaaacagatggattctggtgagagcataattgagaatattcttaaaaatgaagga
ctagtcatagaaaattattataatttagttaatgctatttattcaagagtagataaagaa
gagttttttaagaaagaaagggaaagagaaaaagataataatttcgattattataacaaa
aaaaaaaggatcacttctttttataaaacttcattaagaccatttcaggagcgtttaata
aaatatattgagaggaaacatagcttatatgagcttggggaagatatttttgaagagagt
attactagtgagagacttcatataaaagaaatgcttaaatcggtgcctttatatcaagaa
gagttacgtattttttcagatgattacattgattctgctagcaaaataaaggatttaaag
aggcaacaaaagtctatattggatagattaaatatagataaggtacgcaatctgagaatt
ttgggaagagacttagctattcctgaaagacgagagaggatagaaaaatctttaaatata
cgagaagatctaattaaagaacaaattacagaagctcaacttgctcaaaaagagcttgag
agaattgagatgtattatgaatatccaatggataagataataagcatgtcagaggagatc
cttaagggcaagcagatgatgcaacatgcaaaagatcagttaattaaggctaacttaaga
cttgtggtaagtattgctaaaaagtatgctaatagagggttacatttctttgatcttgtt
caagagggcaatattggtttaattaaggcggttgaaaaatttgagtataagagaggcttt
aagttttctacttatgctacatggtggattcgtcaagcaataacaagatcaatctcagat
caggcgcgtaccattcgtgttcctgttcatatgattgagcagataaataggttgaataga
gaaacaagatatttggttcaagtgttaggtaaagatccaacagatgaggagttgtcagct
agacttgggtgggatcttaaaaaagtaaagactgtaaaaaatgtttcaagagagcccgtt
tcacttgaaacaccaattggagaagaagaagattctgttcttagtgattttattgaagat
aaggctataaaaaatccagcaaaacacacgtcttttgtggtcttgcaagatcaaataaga
gcagttcttgggactcttccagaaagagagcaggaagttgttaagatgagatttggtctt
gaagatggatattctttgactttggaagaagttggattgcattttaatgttacaagagag
agaattagacagattgagtctaaggctttaaggcgacttaaaaatcctaaaaaaacccaa
aaacttaaagattatttagaagatttaaattga
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