Candidatus Borrelia fainii: BOFE_02480
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Entry
BOFE_02480 CDS
T09149
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bfai
Candidatus Borrelia fainii
Pathway
bfai03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bfai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BOFE_02480 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bfai03400
]
BOFE_02480 (mfd)
Enzymes [BR:
bfai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BOFE_02480 (mfd)
DNA repair and recombination proteins [BR:
bfai03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BOFE_02480 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
UvrB_inter
UB2H
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
BDU62708
LinkDB
All DBs
Position
294779..298147
Genome browser
AA seq
1122 aa
AA seq
DB search
MNIEKELTARLNDNQNLKKIQQLIEKNLPFTIVGHEGFFKAFLINKIKEYSNSNKIILIV
KNENISDELKDDLMQITDNIYELNYFSPLIYKDIGSKSKVFIKRVKFLINFYENNPGIYI
VSLKSLLSKIPTKENLFKNIYKIQTDTTINIENLESKLIKLGYEKTMRVTLPGEFTIKNE
IIDIHSFNKTESIRISVELDKIKEIKYFNPLTQLKKGNSISEFDIIPKKEIIWNNENINK
LKHHLKENEYKKLFEQIETKYNARAEEIFYPLIGDIYLSQEINEDTPIINLEIPNLQEEI
KKIYKEYEKLYNQAIESGKKTIAPKEIFINLNDFKLKTNIFIVKTPVNIKTKELIEFNIE
SERKFFSNITLAKEEIQNWLNNGFKVIIAAESNSQKEKLKYIFKDLTKIKIEVLKISSSL
IINKEKIAIILESDIFNRRQKINKAFESSKTKTIDSFTEVEKNSHVVHINHGIGIFRQIK
RIKTSLLEKDYIEIEYADNEKLFIPIEQTHLIQRYIGNETQNIKLDKISSKTWEKKKAYA
KKRIDTIADKLVELYVKRESTKGFQYPQDNEWQLLFESEFPYDETPDQLTAISEIKQDMM
SLKVMDRLLCGDVGFGKTEVAMRAAFKAVMGKKQVAILSPTTILTEQHFNTFKQRFKNFP
INIAMMSRFIKKSKERDIIKKLETGEIDIIIGTHKILSKKIIYKNLGLIIIDEEQRFGVK
EKEKLKEIKISVDCLVLSATPIPRSLHMSLIKLRDISVLKTPPQNRIKIETYVEEFSELL
IKHAIENELSRDGQVFFVHHNIQELDLIKAMLEKMVPYARIATIHARLQGDQIENIMHDF
INKSYQILLATTIIENGINIENANTIIINNANRFGLAQLYQLRGRVGRSSQKAFAYFLYK
ENSILNESAIERLRAISEFSELGTGFQIAIKDMEIRGVGNLLGHEQHGEIESIGLNYYLT
MLNKAIEKRMGKSSNEEEIIIEINYNGFIPDSYINNEQDKISIYKKISRVQNEEENNKIR
ADIYDQFGPIPKELNNLLILSELKLLAKKLNITSLKEKNELLEIEYLNTKSIPVEKIMQI
IKDNPNILKINPEYKNSVFLNLKHVKKTEKINCIYKNLNLLL
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
atgaatatagaaaaagaactaactgccagattaaatgacaatcaaaatctaaaaaaaata
caacaacttattgaaaaaaatctaccctttacaatagtaggacatgaaggattttttaaa
gctttcttaatcaacaaaataaaggaatacagcaatagtaataaaattatattaatagtt
aaaaacgaaaatatctccgatgaactcaaagatgatttaatgcaaattacagacaacata
tatgaacttaactatttcagtccccttatatataaagatatcggttcaaaaagtaaagtc
tttataaaacgagtaaaatttttaatcaatttttatgaaaataatcctgggatctacatt
gtttcactaaaatccctacttagcaaaatccccacaaaagaaaatttatttaaaaacatt
tataaaattcagacagacaccacaataaacatagaaaatcttgaaagtaaacttataaaa
ctaggatatgaaaaaacaatgagagttacattacctggagaatttacaataaagaatgaa
ataatagacatacattcatttaataagacagaatcaataagaatttcagtggagcttgat
aaaataaaagaaatcaaatattttaatcccttaactcaattaaaaaaaggaaattcaatt
tccgaatttgatataattccaaaaaaggaaatcatttggaataacgaaaacataaataaa
ctaaaacaccacttaaaagaaaatgaatataaaaaattatttgaacaaattgaaacaaaa
tataatgcaagagcagaagaaatattttatccactaataggagacatatacctaagtcaa
gaaataaatgaagatacacctattataaatttagaaataccaaatttacaagaagagatc
aaaaagatctataaagagtatgaaaaactttataaccaagcaatagagtctggaaaaaaa
acaattgcaccaaaagaaattttcataaatttgaacgattttaaattaaaaactaatatt
tttatcgtaaaaacccctgtaaatataaaaacaaaagaactaatagaatttaacatcgaa
agtgagcgtaaatttttctcaaacatcacacttgcaaaagaagaaatacaaaactggcta
aacaatggatttaaagtaatcattgcagcagaatctaattcacaaaaagaaaaattaaaa
tatatcttcaaagatctgacaaaaatcaaaattgaagttttaaaaatatcaagctcactt
ataataaacaaagaaaaaatagccattatccttgaatcagatatctttaatagaagacaa
aaaataaataaagctttcgaatcatcaaaaacaaaaactattgattcatttactgaagtg
gaaaaaaacagtcatgttgttcacataaaccatggaattggaatatttcggcagataaaa
agaattaaaacgagtcttcttgaaaaagattacattgaaattgaatacgcagataacgaa
aaattatttattccaatcgaacaaacacatctcattcaaaggtatattggaaatgaaact
caaaatataaaattagataaaatcagttcaaaaacttgggaaaagaaaaaagcttatgca
aagaaaagaatcgacacaattgccgataaacttgttgaactttacgtaaaaagagaaagt
actaagggatttcaatatcctcaagacaatgaatggcaattattatttgaatcagaattt
ccatacgatgaaactccggatcaattaacagcaatatcagaaatcaaacaagacatgatg
agtttaaaagtaatggatagacttttatgcggagatgttggatttggtaaaactgaagtc
gcaatgagagctgcattcaaagctgtcatgggcaaaaaacaggtagcaatactctcccca
acaacaattcttacagaacaacactttaatacatttaaacaaagatttaaaaacttccca
atcaacattgcaatgatgagcagatttataaaaaaatcaaaagaaagagacattataaag
aaactagaaacaggagaaattgacataataattggcacacataaaatactctctaagaaa
ataatatataaaaatttaggactcattataatcgatgaagaacaaagattcggggtaaaa
gaaaaagaaaaactaaaggaaataaaaatctctgttgattgtcttgtcctatcagcaact
ccaataccgagatcccttcatatgtcattaatcaaattaagagatatctctgtcttaaaa
actccaccccaaaatagaataaaaatagaaacttacgtagaagaatttagcgagctacta
attaaacacgcaatagaaaatgaactttctcgagatggacaagttttttttgtacatcac
aatattcaagaactagatttaataaaagcaatgctagaaaaaatggttccttatgcaaga
attgcaaccattcatgcaagacttcaaggtgaccaaattgaaaatattatgcatgatttt
ataaataaatcatatcagatattactagcaacaacaatcattgaaaatggaataaatatt
gaaaatgcaaatacaataataattaacaatgcgaatagattcggacttgcacaattatac
cagctaaggggcagagttggcagaagttcgcagaaagccttcgcttatttcttatataaa
gaaaattcaattttaaacgaaagtgccattgaaagactaagggcaatatctgaattttca
gaacttggaacaggatttcaaattgcaataaaagatatggaaataagaggtgttgggaac
ttacttggacacgaacaacatggagagatcgaatctattggactaaattactacttaaca
atgttaaacaaagcaattgaaaaacgaatgggaaaaagttctaatgaagaagaaatcatt
attgaaatcaattacaatggattcatacccgatagctatataaacaatgaacaagacaaa
atatcaatttataaaaaaatctcaagggttcaaaacgaggaagaaaataacaaaataagg
gctgacatttatgaccaatttggaccaatcccaaaagaacttaacaacctgcttatatta
tcagaactcaaattacttgcaaaaaaactcaatattaccagccttaaagaaaaaaatgag
ttacttgaaatcgaatatttaaatacaaaaagtattcctgtcgaaaaaataatgcaaatc
ataaaagacaaccctaatatactgaaaataaatccagaatataaaaattccgttttctta
aacctaaaacatgttaaaaaaacagaaaaaataaactgcatatataaaaatttgaatcta
ttattataa
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