Bacteroides fragilis BOB25: VU15_00205
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Entry
VU15_00205 CDS
T03897
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bfb
Bacteroides fragilis BOB25
Pathway
bfb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bfb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VU15_00205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bfb03019
]
VU15_00205
03009 Ribosome biogenesis [BR:
bfb03009
]
VU15_00205
Enzymes [BR:
bfb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VU15_00205
Messenger RNA biogenesis [BR:
bfb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VU15_00205
Ribosome biogenesis [BR:
bfb03009
]
Prokaryotic type
rRNA helicases
VU15_00205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
RecG_N
CMS1
Ig_Tie2_1
Motif
Other DBs
NCBI-ProteinID:
AKA50286
UniProt:
A0A149MTP4
LinkDB
All DBs
Position
complement(50250..52160)
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AA seq
636 aa
AA seq
DB search
MKTFEELGVSPEIRKAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLP
LIQKINVKNRIPQSLVLCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIDSQIRSLK
RGVHIIVATPGRLLDLMERKTVSLATVTNVVMDEADEMLNMGFTDSINAILADVPQERNT
LLFSATMSPEIARISKNYLHNAKEITIGRKNESTSNVKHVVYTVHAKDKYAALKRIVDYY
PQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDTVMQKFRIRNIQILVATD
VAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKMREIERI
IGKKFIAGEMPTGKQICEKQLLKVIDDLEKVKVNEEDINDFMPEIYRKLEWLSKEDLIKR
MVSHEFNRFVDYYRNREEIEVPTDSRSERAGKSREGKSSRQAEPGYTRLFINLGKMDNFF
PHELITLLNNNTRGRVELGRIDLMKNFSFFEVEEKQAQNVVKALNRTNWNGRKVTVEVAG
EEASTEHKGRGKRNEGNDQGGRGRSSAPSADRKERGKGSKDSKQADSRKGKKPSREERGY
SAARGPKGKDEWKQFFKDAEPDFSEEGWARRKPKKS
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgaagacatttgaagagcttggcgtttctccggagatacgtaaagctattgaagagatg
ggatacgagaatcccatgccggtacaggaggaagtgattccatacctattaggagagaat
aatgatgtagtagctcttgcacagacagggacgggtaagaccgcagcgtttggcttgccc
ctcatccagaaaattaacgtaaaaaacagaatacctcaatcactcgttctttgccccaca
cgcgagctttgcctccagatagcaggcgacctgaacgactattccaaatacatcgacggg
ctgaaagtattgcccgtatacggcggttcatccatcgacagccagatacgcagcctgaaa
cggggtgtgcatatcattgttgccacaccggggcgactcctcgacctgatggaacgcaaa
acggtatctcttgccactgtcacaaacgtagtgatggacgaagcggacgaaatgctcaat
atgggctttacggacagtatcaatgccatcctggcagatgttccacaagaacgtaacaca
ctgcttttctcggccactatgagcccggaaatagcccgtatttcgaagaactaccttcac
aatgcaaaagagatcaccatcggacgcaagaacgaaagtacgagcaacgtgaagcatgtg
gtctataccgtacatgcaaaagataaatacgccgccctgaaacgcatcgtagactattat
ccgcagatttacggtatcatcttctgccgtacccgcaaagagacacaggaaattgccgat
aaactgatgcaggaaggttataacgctgactcgttgcacggagaactctcacaggcacag
cgtgacacggtgatgcagaagttccgcatccgcaacatccagattctggtagccaccgat
gtagccgcacgtggactggacgtagacgacctgacacacgtcatcaactacggattgccg
gacgatacggaaagttatacgcaccgtagcggacgtacaggacgtgccggaaagacaggt
acatccatcgccatcatcaatttgcgtgaaaaaggaaagatgcgcgaaatagaacgcatc
atcggtaagaaattcattgccggtgaaatgcctaccggtaagcagatctgcgagaaacag
cttctcaaagtgatagacgatcttgaaaaagtaaaggtaaacgaggaggatatcaatgat
ttcatgcctgagatttaccgtaaactggagtggctgagtaaagaagacctcatcaagcgc
atggtatcgcatgagttcaaccggtttgtcgactattatcgcaaccgcgaagaaatagag
gtgccgactgatagccgcagcgaacgcgccggaaaaagccgtgaaggaaaaagcagccgc
caggcagaaccgggttacacccgccttttcatcaatctgggtaagatggataacttcttc
cctcacgaactgatcaccttgctcaacaataacacacgaggaagagtagaattgggacgc
atcgacctgatgaaaaatttctcgttcttcgaagtggaagagaaacaagcacaaaacgtc
gtaaaggcgctgaaccggacaaactggaacggacgtaaagtcacagtagaggtagccgga
gaagaggcatctacagagcacaaaggacgtggaaagcggaatgaaggtaacgatcagggt
ggcagaggaagaagcagcgctccatctgccgaccgcaaagagagaggcaaaggcagcaaa
gacagcaaacaagccgacagccggaaaggcaaaaagccaagccgtgaggaacggggatat
tccgcagcccgcggccccaaaggcaaagatgaatggaaacagttctttaaagatgccgaa
cccgacttcagcgaagaaggatgggcaagaagaaagcctaaaaagagctaa
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