KEGG   Bacteroides fragilis BOB25: VU15_02090
Entry
VU15_02090        CDS       T03897                                 
Name
(GenBank) RNA polymerase sigma70 factor
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
bfb  Bacteroides fragilis BOB25
Pathway
bfb02020  Two-component system
Brite
KEGG Orthology (KO) [BR:bfb00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    VU15_02090
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bfb03021]
    VU15_02090
Transcription machinery [BR:bfb03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     VU15_02090
SSDB
Motif
Pfam: Sigma70_r2 Sigma70_r4_2 Sigma70_ECF GerE Sigma70_r4 HTH_24 HTH_23 HTH_11 HTH_40 HTH_5 HTH_10 PF0610-like_N Sigma70_r3 HTH_38 HTH_20 HTH_ParB DUF2316 PEHE MarR_2 HTH_29 SAM_DprA HTH_17 HTH_AsnC-type Xre-like-HTH PhoU_div HTH_16 HTH_69 HTH_DeoR MarR HTH_3 Terminase_5 Glyco_hydro_5_C
Other DBs
NCBI-ProteinID: AKA50614
LinkDB
Position
529590..530153
AA seq 187 aa
MHSEIAEEKLLVSQFSQGSHIAFKALFMRYYPKVRSFIMGLVKSESEAEDLTQEVFLKLW
THREKFCEVEVFGTYLYVLTKNTTFNYLRSRQNRQDSQGTEWVEESTDTTPYEELVAKDL
QLLIDMVVENMPPQRQMIFRLNREAGLTNAEIAEKLQISKKTVENHLNLALKELKNALLF
FIFLYLC
NT seq 564 nt   +upstreamnt  +downstreamnt
atgcattctgaaatcgcagaagaaaaattactggtctcccaattctcccaaggaagccat
atagcgtttaaggcattgtttatgcgttattatccgaaggtgcgctcttttataatggga
ctggttaaatcggagagtgaagccgaagatttgacacaagaagtttttctcaaactgtgg
acgcaccgtgagaaattttgtgaagtagaagtgttcggaacctatctgtatgtcttgact
aaaaatacaactttcaattatttgcgttcccggcagaatcgtcaggatagtcaggggaca
gaatgggtagaagagtctacagacacgactccttatgaagagttggttgctaaagacttg
cagctattgattgatatggtggtggagaatatgcctcctcaacggcaaatgatttttcgg
ttgaatcgggaggccggactgaccaatgcagaaatagcggagaagttgcagattagtaaa
aaaactgttgagaaccatcttaacttagcgttgaaagaactgaaaaatgctttgttattc
tttatatttctctatttatgttaa

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