Bacteroides fragilis BOB25: VU15_02855
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Entry
VU15_02855 CDS
T03897
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
bfb
Bacteroides fragilis BOB25
Pathway
bfb03030
DNA replication
bfb03430
Mismatch repair
bfb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bfb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VU15_02855
03430 Mismatch repair
VU15_02855
03440 Homologous recombination
VU15_02855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bfb03032
]
VU15_02855
03400 DNA repair and recombination proteins [BR:
bfb03400
]
VU15_02855
Enzymes [BR:
bfb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
VU15_02855
DNA replication proteins [BR:
bfb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
VU15_02855
DNA repair and recombination proteins [BR:
bfb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
VU15_02855
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HHH_3
DUF6282
Motif
Other DBs
NCBI-ProteinID:
AKA54075
UniProt:
A0A1C0X228
LinkDB
All DBs
Position
717547..721341
Genome browser
AA seq
1264 aa
AA seq
DB search
MQDFVHLHVHTQYSLLDGQASVSALVDKAMKDGMKGIAVTDHGNMFAIKEFTNYVNKKNG
GPKGEIKDLKKRIAAIEAGEVECADKDAEIADCKAKIADAEGRLFKPIIGCEMYVARRTM
DKKEGKPDQSGYHLIVLAKNEKGYHNLIKLVSRAWTKGYYMRPRTDRNELEKYHEGLIIC
SACLGGEVPKKITQGLLAEAEEAIQWYKNLFGDDYYLEMQRHKATVPKANHEAYPLQVNV
NKHLIEYSKKYNVKLICTNDVHFVNEEHAEAHDRLICLSTGKDLDDPNRMYYTKQEWMKT
KAEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRQKYTEKDL
FDEFTQDENGNVVLSEEAAKDKIKRLGGYDKLYRIKLEADYLKKLTFDGAKKFYGDPLSP
EVKERLVFELHIMKTMGFPGYFLIVQDFIAAGRNMGVSIGPGRGSAAGSAVAYCLQITKI
DPIKYDLLFERFLNPDRISLPDIDIDFDDDGRGEVLRWVTEKYGQEKVAHIITYGTMATK
LAIKDVARVQKLPLAESDRLAKLVPDKIPDKKLNLKNAIEYVPELQAAEASPDPLVRDTM
KYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIEDTGL
IKMDFLGLKTLSIIKEAVENIRLSKGMELDIDSISIEDPATYKLYSDGRTIGTFQFESAG
MQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVMEKYLKDTYG
ITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFVEGGRKNGHDPKVLE
KIWADWEKFASYAFNKSHATCYSWVAYQTAYLKANYPAEYMAAVMSRSLSNITDITKLMD
ECKMMGVQTLGPDVNESNLKFTVNRNGNIRFGLGAVKGVGEAAVQSIMEERKENGPFKGI
FDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVNSKGETFLETLMRYGNRYQA
DKAAAVNSLFGGDNVIDIATPEILPAERWNDLERLNKERELVGIYLSAHPLDEYAIVLEH
VCNTHMSELDDKSALAGREITMGGIVTSVRRGISKNGNPYGIAKIEDYSGSAEIPFFGND
WVTFQGYLGEGTFLFIKARCQPKQWRPDELDVKITSMELLPDVKEQLIEKITILIPLAEL
NSALVTELASLTKEHPGNTELYFKVTDTEGKMYVDLISRPVKLSVGRELISYLKERPELA
FHIN
NT seq
3795 nt
NT seq
+upstream
nt +downstream
nt
atgcaggatttcgttcatttacacgtccatacgcaatattctcttctggatggtcaggcc
agtgtcagtgcattggtcgataaggctatgaaagacgggatgaaaggtattgccgttacg
gaccatggaaacatgttcgccattaaagagtttacgaactatgttaataagaaaaatgga
ggtccgaaaggagaaataaaggacctgaagaagcggattgcagctattgaagccggtgaa
gtggagtgtgcggataaagatgccgagattgctgactgtaaagctaaaatagcggatgcg
gaagggcgattgttcaagcctatcataggctgtgagatgtatgtggctcgccgtacaatg
gataaaaaggagggaaagcctgaccagagcgggtatcacctgattgtgctcgccaaaaac
gagaaggggtatcataacctgataaaattggtttcgcgggcatggaccaaaggttactat
atgcgtccccgtacagaccggaacgagttggagaaatatcacgaaggtttgattatctgt
tctgcgtgtttgggcggtgaagtgcccaaaaagataactcagggattgttggcggaagca
gaagaagccatccaatggtataagaacctgtttggagacgattattatctggaaatgcag
cgccataaagcgacagtgcctaaagcaaatcatgaagcttatccgttgcaggtgaatgta
aataagcatttgattgaatactccaaaaagtataatgtcaagttaatctgtacgaatgat
gttcactttgtcaacgaagaacatgctgaggcgcacgatcggctgatctgtttgagtacg
ggaaaagatctcgacgatccgaaccggatgtattatacgaaacaagagtggatgaagacg
aaggcagagatgaatgaactctttgccgatgtgcccgaagcattgagtaatacacttgag
attctggataaagtagagtattattcaatcgatcacgcaccgattatgcctacttttgca
atccccgaggactttggaacagaagaaggatatcggcaaaaatatacggaaaaggatctt
tttgatgagttcacccaagacgaaaacggcaacgtggtgttgagtgaggaagcagccaaa
gataaaataaaacgtttgggaggctatgataaactgtaccgtatcaaactggaagccgac
tatctgaaaaagctgactttcgacggagctaagaagttttatggcgatccgttgtcaccg
gaggtcaaagagcggctggtctttgaattacatattatgaagaccatgggtttcccggga
tactttcttatagtacaagattttattgccgccgggcgtaatatgggagtctccattggt
ccgggacgtggttccgctgccggttctgccgtagcctattgtttgcagatcactaaaata
gacccgatcaaatacgatttgctgtttgagcgttttttgaatcccgatcgtatttcattg
cctgatatcgatattgacttcgatgatgatggtcgtggcgaagtgttacgttgggtgacg
gagaaatatggacaggaaaaggtggcgcatatcattacctatggtactatggctacgaaa
ctggctatcaaagatgttgcccgtgtccagaaacttccgcttgccgaatcggatcgcttg
gccaaattggttccggataaaattccggataagaaactgaatctgaagaatgccatagaa
tatgtgcccgaattgcaggcggctgaagcatctcccgatcctttggtgagggatacgatg
aaatatgccaagatgcttgaggggaatgtgcgtggaacgggtgtacatgcctgtggcact
attatttgtcgtgatgatatcacggattgggtaccggtcagcacggctgatgataaagag
accggcgaaaagatgctggttacccaatatgaaggttcggtgatcgaagataccggattg
atcaagatggactttctggggctgaaaacattgtctattataaaggaggctgtcgaaaat
attcgtttgagtaaaggaatggaactggatatcgattccatttcaatcgaggatccggct
acttataaactttacagtgacggacgaacgatcggtactttccagtttgagtctgccggt
atgcagaagtacctgcgtgagttgcaaccttctacgtttgaggacctgattgcgatgaat
gccctttaccgtccgggtccgatggattatattcctgactttattgatcgtaaacatgga
cgtaagcctattgaatatgatattcctgtcatggagaaatacctgaaggatacatacggt
attacggtctatcaggagcaggtcatgcttttgtcacgtctgctggccgactttacgcgt
ggtgaatcggatgccctccgtaaagcgatgggtaaaaaattgcgtgataagttggatcac
atgaaacccaagtttgtagaaggcggaaggaaaaacggacacgacccgaaagttcttgaa
aagatttgggcagactgggagaaatttgcatcgtatgcgttcaataaatcacatgccacc
tgttattcttgggttgcctatcagactgcttatctgaaagccaattatccggctgaatat
atggctgctgtcatgagccgaagtttgtcgaatatcactgatattaccaaactgatggac
gagtgtaaaatgatgggagtacagacgttgggaccggatgtgaatgaaagtaacctgaag
tttaccgtaaaccggaatggaaatatacgtttcggattgggagccgtcaaaggtgtgggt
gaggctgccgtgcaaagcatcatggaggagcgaaaagagaacggtccctttaaaggtatc
ttcgactttgtgcagcgtgtcaacctgaatgcttgtaacaagaaaaatatggaatgcctg
gcacttgccggtggattcgatagctttcctgaactgaagcgtgaacagtattttgctgtg
aacagcaaaggagagacttttcttgagacattgatgcgttatggcaaccgttaccaagct
gataaggctgccgccgttaattctctgttcggtggagataacgttatcgatatagcgact
ccagaaattctaccggcggaacgttggaacgatttggagagactgaataaggaacgcgaa
ctggtaggtatttatttgtcggcacatccgcttgatgaatatgccattgtgttggaacat
gtttgcaatacacatatgagcgaacttgatgataaatcggctttggcaggaagagagatt
acgatgggaggcattgttaccagtgtccgccggggtatcagtaagaatggaaatccttat
ggtatagctaaaatagaagattattccggttcggcggagattcctttctttggaaatgac
tgggttactttccaaggctatttaggtgaaggtactttcttgtttatcaaagcccgttgt
caacctaaacaatggcgtcccgatgaacttgatgtcaagattacttcgatggaattgctg
cccgatgtcaaggaacaactgatagagaagattacgattctgattccgcttgccgaactt
aattcggctttggtaaccgagcttgcttctttaacgaaagaacacccgggaaatacggaa
ctttatttcaaagtaacggatacggaggggaagatgtatgtagacctgatttcccgtcct
gtgaaactttcggtcggcagagaattaatttcctatttaaaggaacgtcccgaacttgcg
tttcatataaattga
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