Bacteroides fragilis BOB25: VU15_05390
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Entry
VU15_05390 CDS
T03897
Name
(GenBank) RNA polymerase sigma70 factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
bfb
Bacteroides fragilis BOB25
Pathway
bfb02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
bfb00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
VU15_05390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bfb03021
]
VU15_05390
Transcription machinery [BR:
bfb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
VU15_05390
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
Sigma70_ECF
GerE
HTH_10
HTH_38
HTH_23
HTH_40
HTH_11
PRESAN
PCI
HTH_24
HTH_Tnp_ISL3
CFAP99_CC
HTH_30
HTH_3
Fe_dep_repress
HTH_AsnC-type
EntA_Immun
wHTH_Par
Motif
Other DBs
NCBI-ProteinID:
AKA51194
LinkDB
All DBs
Position
1383063..1383608
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AA seq
181 aa
AA seq
DB search
MKKDGFSEIYDIYFPKLLRFTRTYLISEDESENIVQEIFIYLWEHRDIIETLQNLNAYLF
TLAKNRCIDYFRKEMVREVRKGSLSEIENRELQLKLYSLEAFDNDRLSDADIEEILNNAI
NRLPERCREIFIMSRLQNLRYKEIAEKLNVSPNTVENQIVIALRKLKEDLKDYFPLFVFI
I
NT seq
546 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaagacggtttctctgaaatttatgatatttattttccgaagttgctgcgtttt
accaggacgtatctgatttcggaagatgaatcggagaatattgtccaagaaatctttatt
tatttgtgggaacacagagatatcattgagactcttcagaatctgaatgcctatctgttt
acgttagcaaaaaatcgttgtatagactattttcgtaaggagatggtccgtgaagttcgt
aaaggttcgctttcggaaatagagaacagagaacttcaattgaaactgtactcattggaa
gcatttgataatgatcgtctttcggatgccgatattgaagaaatactgaataatgccatc
aatcgtttaccggagaggtgccgtgaaatatttattatgagccgtttgcaaaatctccgt
tataaagagatagctgaaaagttgaatgtttctccaaatacggttgaaaatcagattgtc
atagcgttgcgtaaattaaaagaagacttgaaagactactttcccctctttgttttcatt
atctga
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