KEGG   Bacteroides fragilis BOB25: VU15_05390
Entry
VU15_05390        CDS       T03897                                 
Name
(GenBank) RNA polymerase sigma70 factor
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
bfb  Bacteroides fragilis BOB25
Pathway
bfb02020  Two-component system
Brite
KEGG Orthology (KO) [BR:bfb00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    VU15_05390
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bfb03021]
    VU15_05390
Transcription machinery [BR:bfb03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     VU15_05390
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 Sigma70_r4 Sigma70_ECF GerE HTH_10 HTH_38 HTH_23 HTH_40 HTH_11 PRESAN PCI HTH_24 HTH_Tnp_ISL3 CFAP99_CC HTH_30 HTH_3 Fe_dep_repress HTH_AsnC-type EntA_Immun wHTH_Par
Other DBs
NCBI-ProteinID: AKA51194
LinkDB
Position
1383063..1383608
AA seq 181 aa
MKKDGFSEIYDIYFPKLLRFTRTYLISEDESENIVQEIFIYLWEHRDIIETLQNLNAYLF
TLAKNRCIDYFRKEMVREVRKGSLSEIENRELQLKLYSLEAFDNDRLSDADIEEILNNAI
NRLPERCREIFIMSRLQNLRYKEIAEKLNVSPNTVENQIVIALRKLKEDLKDYFPLFVFI
I
NT seq 546 nt   +upstreamnt  +downstreamnt
atgaaaaaagacggtttctctgaaatttatgatatttattttccgaagttgctgcgtttt
accaggacgtatctgatttcggaagatgaatcggagaatattgtccaagaaatctttatt
tatttgtgggaacacagagatatcattgagactcttcagaatctgaatgcctatctgttt
acgttagcaaaaaatcgttgtatagactattttcgtaaggagatggtccgtgaagttcgt
aaaggttcgctttcggaaatagagaacagagaacttcaattgaaactgtactcattggaa
gcatttgataatgatcgtctttcggatgccgatattgaagaaatactgaataatgccatc
aatcgtttaccggagaggtgccgtgaaatatttattatgagccgtttgcaaaatctccgt
tataaagagatagctgaaaagttgaatgtttctccaaatacggttgaaaatcagattgtc
atagcgttgcgtaaattaaaagaagacttgaaagactactttcccctctttgttttcatt
atctga

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