Bacteroides fragilis BOB25: VU15_11715
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Entry
VU15_11715 CDS
T03897
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
bfb
Bacteroides fragilis BOB25
Pathway
bfb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bfb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
VU15_11715
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bfb03400
]
VU15_11715
DNA repair and recombination proteins [BR:
bfb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
VU15_11715
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
VU15_11715
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
DEAD
UVR
SrpI-like
EAD4
Kinesin
PIP5K
HIND
Motif
Other DBs
NCBI-ProteinID:
AKA52304
LinkDB
All DBs
Position
2906833..2908866
Genome browser
AA seq
677 aa
AA seq
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MNFELTSAYKPTGDQPEAIAQLTEGVLEGVPAQTLLGVTGSGKTFTIANVIANINKPTLI
LSHNKTLAAQLYSEFKGFFPNNAVEYYVSYYDYYQPEAYLPSSDTYIEKDLAINDEIDKL
RLAATSALLSGRKDVVVVSSVSCIYGMGNPSDFYNNVIEIERGRTINRNVFLRRLVDSLY
MRNDIELNRGNFRVKGDTVDIYLAYSDNLLRVTFWGDEIDGIEEVDPVSGVTIAPFEAYK
IYPANLFMTTKEATLRAIHEIEDDLTKQVAYFESIGKEYEAKRLYERVTYDMEMIRELGH
CSGIENYSRYFDGRAAGTRPYCLLDFFPDDFLIVIDESHVSVPQIRAMYGGDRARKINLV
EYGFRLPAAMDNRPLKFEEFESMAKQVIYVSATPADYELVQSEGIVVEQVIRPTGLLDPV
IEVRPSLNQIDDLMEEIQIRIEKEERILVTTLTKRMAEELTEYLLNNNVRCNYIHSDVDT
LERVKIMDDLRQGVYDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRA
ARNVNGMVIMYADKITDSMRLTIDETNRRREKQLAYNEEHGITPQQIKKARNLSVFGNGA
ETEDTQKGTRAYVEPSSPNIAADPVVQYMSKAQLEKSMERTRKLMQEAAKKLEFIEAAQY
RDELLKMEDLMKEKWPG
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atgaattttgaattaacatccgcatacaagccgactggagatcagccggaagcaattgcg
caactgaccgaaggggttcttgaaggcgtaccggcacaaacgttactgggagtaaccggt
tccggaaagacatttaccatagccaacgttattgccaatatcaataaaccaacattgatc
ttaagccataacaaaacactggcagcccagctctacagcgaatttaaaggatttttcccc
aataatgctgtcgaatattatgtatcttattatgattattaccagccggaggcctatctg
ccaagttcggatacatatatagaaaaagacctcgctatcaatgacgaaatagataagctc
agattggctgcgacttcggctcttctatccggcagaaaagatgtagtggttgtatcctcc
gtatcttgtatttatggtatgggaaacccatccgatttttataacaatgtaattgaaata
gaacgaggccggaccatcaaccgcaatgtatttcttcgccggttggtagacagcctgtat
atgcgcaacgatattgaactgaatcgtggaaatttccgggtcaaaggagatacggtggat
atatatctggcctattcggacaatctgctccgggtaaccttttggggagacgaaattgac
ggtatcgaagaagtagatccggtatccggagtcaccatcgcaccttttgaagcctataaa
atatacccggctaacctgtttatgactactaaagaagcaactttacgggccatccatgaa
atagaagatgatcttaccaaacaagttgcctatttcgagtctatcggcaaagagtacgaa
gccaaacgtctatacgaacgagtgacatatgatatggagatgattcgggaactcggtcat
tgctcaggtattgaaaactattcacgatattttgacggccgtgctgcaggtacacgtcca
tactgtttgctggattttttccctgacgattttttgattgtaatagatgaaagccacgtc
agcgtaccgcaaatacgagctatgtacggaggtgaccgtgcccgtaaaataaacttagtg
gaatatggttttcgtttaccggcagctatggacaaccgccccctgaaattcgaagaattc
gagtcgatggctaaacaggtgatttatgtcagcgctactcctgccgattatgaattagta
cagtccgagggtattgttgtcgagcaggtgatccgtcctaccggtctgctcgatccggtg
atcgaggtacgtcccagcctgaatcagatcgatgatctgatggaagaaatacagatacgc
attgagaaagaagaacgcatacttgtcaccacactgaccaaacgtatggccgaagaattg
acagaatatctattaaacaacaacgtacgttgcaactacattcacagcgatgtggataca
ttggaacgggtcaagatcatggatgatctccgtcaaggagtttacgatgtgttgatcggg
gtgaatttattgcgcgaaggtctcgaccttccggaagtgtcactggttgccatcctcgat
gcggacaaagaaggatttctccgttcccaccgttcattgacacaaactgccggacgagca
gcccgaaatgtaaatggaatggtgatcatgtatgcagacaaaatcacagatagcatgcga
ctgactattgatgaaaccaatcgtcgccgtgagaagcaacttgcatacaacgaagaacat
ggtattactccgcaacaaattaaaaaggcccgtaatctgtctgttttcggaaacggagca
gaaacagaagatactcaaaaaggtacccgtgcatacgtggagccttcttcacccaatatt
gcagctgatccggtcgtacaatatatgagcaaagcccaactggaaaaaagtatggagcgt
actcgcaagttaatgcaggaagcagctaagaaacttgaattcattgaagcagctcaatac
agagacgaattacttaagatggaggacttaatgaaagagaaatggcccggataa
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integrated database retrieval system
