Bacteroides fragilis BOB25: VU15_12170
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Entry
VU15_12170 CDS
T03897
Name
(GenBank) RNA 2',3'-cyclic phosphate--5'-hydroxyl ligase
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
bfb
Bacteroides fragilis BOB25
Brite
KEGG Orthology (KO) [BR:
bfb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bfb03016
]
VU15_12170
Enzymes [BR:
bfb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
VU15_12170
Transfer RNA biogenesis [BR:
bfb03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
VU15_12170
Prokaryotic type
tRNA splicing ligases
VU15_12170
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AKA52386
LinkDB
All DBs
Position
complement(3017338..3018735)
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AA seq
465 aa
AA seq
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MGIRLKDLSKLGYRDNVARSLAVALVGKYCKHETKEQILAALGDILKNPEVYKNSEIWSK
LAEHLSPVFIEKRLTPYDLLDEPLGYKTYGSKYIETLAKQQMNLAMRLPITLAGALMPDA
HAGYGLPIGGVLATDHAVIPYAVGVDIGCRMNLTLFDAGEDFLKRYSHHIKEALKEFTHF
GMDGGLSFAQEHEVLDREEFRMTELLRGLHGKAVRQLGSSGGGNHFVEFGKMSLQAGNVL
GVPEGNYVALLSHSGSRGLGAAIAKHYSMLARDLCRLPREAQHFAWLGLDTEEGQEYWLS
MNLAGDYARACHERIHLNLSKALGLKPLANMNNHHNFAWKEEIAPGQTAIVHRKGATPAQ
KGQPGLIPGSMATPGYLVCGKGISEALCSASHGAGRAMSRQKAKDNFTRSALRKYLSQAG
VTLIGGSVEEMPLAYKDIDRVMKTQEELVEVQGTFMPCIVRMNKE
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atgggaatacgtttaaaagatttaagtaaactgggatatagagataatgtagctcgtagt
ctggctgttgctctcgttggcaaatattgtaaacacgaaacaaaagagcagatattagcc
gccttgggcgatattctcaagaatcccgaggtgtataaaaacagtgagatatggagtaaa
ctggccgaacatctttctcctgtatttatcgaaaaaagattgacgccgtatgatttactt
gatgagcccttgggttataaaacatatggaagcaagtacattgaaacattagccaaacag
cagatgaatctcgccatgcggctgccgattactcttgccggagcattgatgcccgatgca
catgccggttacgggttaccgatagggggagtattggctacagatcatgcggttatcccg
tatgctgtgggggttgatatcggttgtcggatgaatctcaccctgtttgatgccggggag
gattttctgaaacgctattcgcaccatattaaagaagcgctgaaggagtttactcatttt
ggcatggatggcggattgtcttttgcacaagagcatgaggtgcttgacagagaagagttc
cgaatgaccgaattgttgagaggacttcatggcaaggcggtacggcaattaggtagctcc
ggtggtggaaatcattttgtggaatttggtaagatgagcttacaggccggtaatgtcttg
ggcgttccggaaggaaactacgtggctttgctgtcccattccggttcgcgtggtttgggt
gctgccattgcgaaacactatagtatgctggcacgcgacctctgccgtctgcctcgcgag
gctcagcactttgcctggctggggttggatacggaagaaggacaggaatactggcttagt
atgaatttagcgggtgattatgctcgtgcctgccatgagcggattcatctgaatttgtca
aaagctttggggctgaaacctttggccaatatgaacaatcaccacaattttgcatggaaa
gaggaaatcgctcccggacagacagccattgtgcatcgtaaaggagcaacacctgcacag
aaaggccaaccgggactgatccccggaagtatggcaacgcccggttatttggtatgtggt
aaagggataagtgaggccctttgttctgcctcgcatggagcgggacgagctatgtcccgc
caaaaggcaaaagacaactttacccggtcggcattgagaaagtatctttctcaggccgga
gtcacgctgattggtggcagtgtcgaagaaatgccgttggcttacaaggatattgaccgg
gtgatgaagacccaggaggaactggttgaagtccaaggtaccttcatgccctgcatcgta
cgaatgaataaagaatag
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