Bacteroides fragilis BOB25: VU15_13745
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Entry
VU15_13745 CDS
T03897
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
bfb
Bacteroides fragilis BOB25
Pathway
bfb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bfb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VU15_13745
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bfb03021
]
VU15_13745
03019 Messenger RNA biogenesis [BR:
bfb03019
]
VU15_13745
Transcription machinery [BR:
bfb03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
VU15_13745
Messenger RNA biogenesis [BR:
bfb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
VU15_13745
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA
OB_RNB
AAA_25
Mor
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AKA52661
LinkDB
All DBs
Position
3389360..3391414
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AA seq
684 aa
AA seq
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MYNIIQLNDKNLSELQAIAQELGIKKTDSLKKEELVYKILDEQAIAGATKKVAADKLKEE
RKEDKKKRSRVTVKKENADKVFSSTKNGELTKTDAKTPAAKTQPQPKTTEPTPETAKEAN
AETNATPAESVKVTPYATPKKKPGRPRKNQVETEAKPAEETTEKPETVPSAQEEKPAAQP
EAEKRPISKPILKPKPAVVDEESSILSDIDADDDFIPIEDLPSEKIELPTELFGKFESTK
AEAATAPEPVAQPQRPRVIRPRDNNNNNNNNNQRNNNQRQPVQQRPMPQQNAAEAAPVQE
RRVIEREKPYEFDDILTGTGVLEIMQDGYGFLRSSDYNYLSSPDDIYVSQSQIKLFGLKT
GDVVEGVIRPPKEGEKYFPLVKVSKINGRDAAFVRDRVPFDHLTPLFPDEKFKLCKGGYS
DSMSARVVDLFSPIGKGQRALIVAQPKTGKTILMKEIANAIAANHPEVYMIMLLIDERPE
EVTDMARSVNAEVIASTFDEPAERHVKIAGIVLEKAKRLVECGHDVVIFLDSITRLARAY
NTVSPASGKVLSGGVDANALHKPKRFFGAARNIENGGSLTIIATALIDTGSKMDEVIFEE
FKGTGNMELQLDRNLSNKRIFPAVNIVASSTRRDDLLLDKQTLDRMWILRKYLSDMNPIE
AMDFVKDRLEKTKDNDEFLMSMNS
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgtataacatcattcaattgaacgacaagaatttgtcggaactacaagctattgcccag
gaattgggtatcaaaaaaacagactcacttaagaaagaagaacttgtctacaaaatcctc
gacgaacaagccatagccggagctactaaaaaggtagctgccgacaaactgaaagaggaa
cgcaaagaagataagaaaaaacgctctcgggtgacagtaaagaaggaaaacgccgacaag
gttttctcttctaccaagaatggagaactaactaaaacagatgccaaaacacctgcagcc
aaaacacagccacaacctaaaacaacagaaccgaccccagaaacagctaaagaggcaaac
gccgaaacaaacgccactccggccgaatctgtcaaagtgacaccttatgccactccgaaa
aagaaaccgggacgtccccgtaaaaatcaggtagaaacagaagctaaacccgcagaagaa
actaccgaaaaaccggaaacagtaccatcggcacaagaagaaaagcccgctgcccaaccg
gaagcagaaaaacgtcccatcagcaaaccgattctcaaacccaaaccggccgttgtagac
gaagaaagctcgatcctctcggatatagatgcagacgatgattttatccccatcgaagac
ctgccttcggaaaaaatagaattgccaaccgaactgttcggcaaatttgaatcgaccaaa
gccgaagcagcaacagcccccgaacctgtggcacaaccccaacgcccgcgtgtgattcgc
ccacgcgacaacaataacaacaacaataataataaccaacgcaacaataaccagcgtcag
cctgtacaacagcgtcccatgccgcaacaaaatgccgccgaagccgcacccgttcaggaa
cgccgcgtgattgaacgtgagaaaccttatgaatttgatgatatcctcaccggaaccggt
gtattggaaatcatgcaggatggctacggattcctccgttcgtcagattataactacctc
tcttcaccagacgatatctacgtttcgcaatcccagatcaaactgttcggtctgaagacc
ggtgacgtagtagaaggtgtaatccgtccgcccaaagaaggcgaaaaatacttcccgctg
gtaaaggtttctaaaatcaacggacgtgatgccgctttcgtacgtgaccgtgtaccgttc
gaccatctcactccgctgttcccagacgaaaagttcaagctttgcaaaggaggctactcc
gactcgatgtcggcacgtgtagtcgacctcttttcaccaatcggtaaaggacagcgtgcc
ttgatcgtggctcagcccaagaccggtaaaaccatcctgatgaaagaaatcgccaatgcc
atcgctgccaaccatccggaagtatatatgatcatgttgttgattgacgaacgtccggaa
gaagtaaccgacatggcccgcagtgtcaatgcggaagtgattgcttctacattcgacgaa
cctgccgaacgccatgtgaaaattgccggcatcgtactcgaaaaagctaaaagattggta
gagtgcggacacgatgtagtgatcttcctcgattctatcacccgtctggcgcgcgcatac
aatactgtatctccggcatcaggaaaggtactctcgggtggtgtggatgccaatgcacta
cacaaaccgaaacgtttcttcggagcagcccgtaacatagagaacggaggttcgctcacc
attatcgctactgccctgatcgacaccggttcgaagatggacgaagtaatctttgaagag
ttcaagggtacaggtaacatggagttgcagctcgaccgcaacctaagtaacaaacgtatc
ttccctgctgtcaacattgtggcatcgagcacccgccgcgacgacttgctgctcgacaag
caaacactggaccgcatgtggattctacgcaagtatctgtcggatatgaatcctatcgaa
gcaatggatttcgtaaaagacagattggaaaaaaccaaagacaacgacgagttcctgatg
agcatgaacagctaa
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