Bacteroides fragilis BOB25: VU15_15305
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Entry
VU15_15305 CDS
T03897
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bfb
Bacteroides fragilis BOB25
Pathway
bfb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bfb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VU15_15305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bfb03019
]
VU15_15305
03400 DNA repair and recombination proteins [BR:
bfb03400
]
VU15_15305
Enzymes [BR:
bfb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VU15_15305
Messenger RNA biogenesis [BR:
bfb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VU15_15305
DNA repair and recombination proteins [BR:
bfb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
VU15_15305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
DNA_pol_A_exoN
zf-CXXC
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AKA54261
LinkDB
All DBs
Position
3765722..3767527
Genome browser
AA seq
601 aa
AA seq
DB search
MIQTLKTYFGYDSFRPLQEEIIHNLISKKDSLVLMPTGGGKSICYQLPALLMEGTAIVIS
PLISLMKDQVETLRANGIPAGALNSSNDETENANLRRACISGQLKLLYISPEKLLSEADY
LLRDMTLSLFAVDEAHCISQWGHDFRPEYARMGFLRNQFPNVPMIALTATADKITREDIV
RQLQLRQPQIFISSFDRPNLSLSVKRGYQPKEKSKAIIDFITRHRGESGIVYCMSRSKTE
TVTQMLQKHGIRCGVYHAGLSARQRDETQDDFINDRIEVVCATIAFGMGIDKSNVRWVIH
YNLPKSIESFYQEIGRAGRDGMASDTILFYSLGDLILLTKFATESNQQNINLEKLNRMQQ
YAESDICRRRILLSYFGETTTEDCGNCDVCRNPPERFDGTIIVQKALSAIARTNQQVSIT
LLIDILRGNPTTEITEKAYTELKTFGAGRDIPARDWQDYLLQMLQMGYFEIAYNENNHLK
ITGSGSDVLFGRKKAMLVVIRREEPATAKRRKKSAATPTQAWAEESRSKEEDLFEALRAL
RKQLADQEALPAYIVLSDKVLHLLCLSRPTTVEAFGNINGIGEYKKKKYGKDFVALIRQF
V
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atgatacagaccctcaaaacttatttcggttatgatagcttccgtcctttgcaggaagag
atcatccacaacctgataagtaaaaaagactcactggtattgatgcctacggggggaggc
aaatcaatctgctatcagcttccggctctgcttatggaaggcacagccattgttatttcg
ccccttatttcactgatgaaggatcaggtagaaactctacgtgccaacggaataccagca
ggtgcactaaacagcagcaatgacgaaaccgaaaatgccaacttacgcagagcctgcatc
tcaggacaacttaagctcctctacatctcgcccgagaaattactgtctgaagccgactat
ctgctgagagacatgactctctcactgtttgcagtggacgaggcccactgtatttcacaa
tgggggcatgacttccgcccggaatatgcccggatgggattcttacgcaaccagttcccc
aatgtgcctatgatcgccctgactgctacggcagataaaattaccagggaggatatcgtc
cgccagttgcaattgagacaaccgcaaatatttatttcatcgttcgaccgccccaacctg
agcctgtctgtaaaaagaggctatcaacccaaggagaaaagtaaagcgatcatagatttc
attacccgtcacaggggggaaagcggaatcgtctactgcatgagccgtagtaagaccgaa
acagtgacacagatgctgcaaaagcacggtatccgttgcggtgtgtatcatgccggattg
tccgcccggcaacgggacgagacacaggacgacttcatcaacgaccggatagaggtggta
tgtgccactatcgctttcggaatgggtatcgacaaatcaaatgtgcgctgggtgatacat
tataacctacctaaaagcatcgaaagcttttatcaggaaatcggccgtgccggacgcgac
ggcatggcaagcgacactatcctgttctactcattgggtgacttgattctactgacaaag
tttgcaacggagagtaaccaacagaatatcaatctggaaaaattaaaccggatgcaacaa
tatgccgaatccgacatctgccggcggcgtatcctcttaagttatttcggcgaaacgact
acggaagattgtggcaactgtgatgtatgccgaaatccacccgagcggttcgacggcacc
atcatcgtccagaaagccttaagtgccattgcccgcaccaaccagcaggtaagcatcact
ctcctgatagacattctgaggggaaacccaacgactgaaatcacagaaaaagcatataca
gaattgaaaacgttcggagccggaagagacatccccgcacgtgactggcaggattatctg
ttgcaaatgctgcaaatgggttacttcgagatagcctacaacgaaaacaatcacctgaaa
ataacagggagcggcagtgacgttcttttcggccgtaaaaaggcaatgctggttgtcatc
cgcagagaagagcctgcaactgccaaaagaagaaaaaagagtgcagccacccccacacaa
gcatgggcagaagaaagcagaagcaaagaagaagacctgttcgaagcattgcgcgcatta
cgcaaacagttggccgatcaggaggcactcccggcttacatcgtattgtcggataaagta
ttgcatctgctctgtctgtcacgtcccacgacagtcgaagccttcggtaacatcaacggg
attggtgaatataaaaagaaaaagtacggaaaagattttgttgccctgatccgtcagttc
gtatag
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integrated database retrieval system
