Bacteroides fragilis BOB25: VU15_17630
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Entry
VU15_17630 CDS
T03897
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bfb
Bacteroides fragilis BOB25
Pathway
bfb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bfb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VU15_17630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bfb03019
]
VU15_17630
03400 DNA repair and recombination proteins [BR:
bfb03400
]
VU15_17630
Enzymes [BR:
bfb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VU15_17630
Messenger RNA biogenesis [BR:
bfb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VU15_17630
DNA repair and recombination proteins [BR:
bfb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
VU15_17630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
TrmB
HTH_Crp_2
ResIII
MarR
HTH_5
HTH_9
Rrf2
HTH_20
Reovirus_cap
Dimerisation
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
AKA53344
UniProt:
A0A149NQD8
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All DBs
Position
4321340..4323244
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AA seq
634 aa
AA seq
DB search
MTYQEILKQYWGYDSFRDLQEDIITSIGNGKDTLGLMPTGGGKSITFQVPALAKEGLCIV
ITPLIALMKDQVQNLKKRGIKAIAIYSGMTRQEIVVALENCIFGDYKFLYISPERLDTEI
FRAKLRSMKISMITVDESHCISQWGYDFRPAYLKIADIRDLVPDAPVLALTATATPEVVK
DIQERLRFREENVFRMSFERKNLAYIVRPTDNKNGELLHILNRIQGSAIVYVRSRRKTKE
TTELLVNEGITADFYHAGLDNATKDLRQKRWQNGESRVMVATNAFGMGIDKPDVRIVIHL
DLPDSPEAYFQEAGRAGRDGQKAYAVILYAKSDKTTLSKRIADTFPDKDYIKDVYEHLQY
HYQMAMGDGLGCMYDFSLEEFCRKFKYFPVPADSALKILTQAGYLEYTDEQDNASRIIFT
IRRDELYKLREMGEAAEKLIQMILRSYTGVFTDYAYISEQTLAVRTGLTRQQIYDLLVML
SKRRIVDYIPHKKTPYIIYTRERIDLHYLQIPRAVYEERKERYETRIHAMVEYVTSENVC
RSRMLLRYFGEKNEHNCGQCDVCLSHRAEPDISQSTFDGLREQICALLKEHPMTPAEIAS
HINTDKEQLSEVIRFMLDEGLLSSENGLLTEKTS
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
gtgacttaccaagagattttaaagcaatactggggttatgattccttccgcgacctgcag
gaggacatcataaccagcattggtaatggaaaagacacactgggactgatgcccactgga
ggtggaaagtcaattacgtttcaggttccggcccttgccaaagagggattgtgcattgtc
atcaccccactgattgctctaatgaaggatcaggtgcagaacctgaaaaagcgcggaatc
aaagcgatagccatctattcaggaatgacacggcaagagattgtggtggcattggagaac
tgcatcttcggcgactataagtttctatacatctctcccgaacggttggataccgaaatc
ttccgggccaaactccggtccatgaaaatcagtatgattacggtagacgaaagccattgc
atctcacaatggggatatgactttcgtccggcttatctgaaaatagcggatatcagggat
ctcgtaccggatgctccggtcttggcactgaccgccacggccactcccgaagtagtgaag
gacatacaggagcgcctccgcttccgggaagaaaacgtgttccgtatgagcttcgaacga
aagaatctggcatacatcgttcgccccactgataataaaaacggggagttgctgcacata
ctgaaccggatacaaggcagcgcgattgtatatgtacgaagccggcgaaaaaccaaagaa
acaaccgagctgctggtaaacgaaggaatcacggccgacttttatcatgcgggactggat
aacgcaaccaaagatcttcgccaaaaacgatggcaaaacggagaaagccgggtgatggta
gctaccaacgcattcggtatgggcattgacaaaccggacgtacgtatcgtcatccacctg
gacctgcccgactcaccggaagcctactttcaggaagcgggacgagcgggacgagacgga
caaaaggcatacgcggtgatactctatgccaagtcggataaaacaacgctcagcaaacgc
attgcagatactttcccggataaagactatataaaagatgtgtacgagcatctgcaatat
cattatcagatggcgatgggcgacgggctgggatgcatgtatgacttcagcctggaagaa
ttctgccgcaagttcaaatattttcccgtacctgcagacagcgcactgaagatattgaca
caggcaggatacctggaatataccgatgagcaggacaatgcctcacggattatcttcacg
atccgccgggatgagttatataaactccgtgagatgggagaagccgcagagaaactgata
caaatgattctgcgatcttacacgggtgtctttacagactatgcctacatcagcgagcag
actctggcggtacgtacgggactgacccggcaacagatttacgatttgctggtgatgctg
agcaagcgccgtatcgtcgactacatcccgcacaaaaaaacaccttacattatatataca
cgtgagcggatagacctccattatctgcaaataccccgagcagtatatgaagaacggaaa
gaacgctatgaaacccgtatccatgccatggtggaatacgtcacttcggagaatgtctgc
cgtagccggatgctgctccgctacttcggagagaagaacgaacataactgcgggcaatgt
gacgtctgcctcagccaccgcgccgaaccggatatatcacaaagcaccttcgacggactg
agagagcaaatatgtgctctgctgaaagagcatccgatgactccggcggagatagcttca
cacataaatacagataaagagcagttgagcgaagtgatacggtttatgctggacgagggt
ttactgagctctgagaacggactgcttactgaaaaaacttcctga
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