Bacteroides fragilis BOB25: VU15_19310
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Entry
VU15_19310 CDS
T03897
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bfb
Bacteroides fragilis BOB25
Pathway
bfb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bfb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
VU15_19310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bfb03021
]
VU15_19310
03400 DNA repair and recombination proteins [BR:
bfb03400
]
VU15_19310
Enzymes [BR:
bfb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
VU15_19310
Transcription machinery [BR:
bfb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
VU15_19310
DNA repair and recombination proteins [BR:
bfb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
VU15_19310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AKA53628
UniProt:
A0A149MW54
LinkDB
All DBs
Position
complement(4687673..4691956)
Genome browser
AA seq
1427 aa
AA seq
DB search
MAFRKENKIKSNFSKISIGLASPEEILENSSGEVLKPETINYRTYKPERDGLFCERIFGP
IKDYECHCGKYKRIRYKGIVCDRCGVEVTEKKVRRERMGHIQLVVPVAHIWYFRSLPNKI
GYLLGLPTKKLDSIIYYERYVVIQPGVKAEDGIAEFDLLSEEEYLDILDTLPKDNQYLED
TDPNKFIAKMGAEAIYDLLARLDLDALSYELRHRAGNDASQQRKNEALKRLQVVESFRAS
RGRNKPEWMIVRIVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIEIKAP
EVILRNEKRMLQESVDSLFDNSRKSSAVKTDANRPLKSLSDSLKGKQGRFRQNLLGKRVD
YSARSVIVVGPELRMHECGIPKLMAAELYKPFIIRKLIERGIVKTVKSAKKIVDRKEPVI
WDILEHVMKGHPVLLNRAPTLHRLGIQAFQPKMIEGKAIQLHPLACTAFNADFDGDQMAV
HLPLSNEAVLEAQMLMLASHNILNPANGAPITVPSQDMVLGLYYITKLRKGAKGEGLTFY
GPEEALIAYNEGKVDIHAPVKVIVKDLDENGNIVDVMRETSVGRVIVNEIVPPEVGYINT
IISKKSLRDIISAVIKACGVARTADFLDGIKNLGYKMAFQGGLSFNLGDIIIPKEKETLV
QRGYEEVEQVINNYNMGFITNNERYNQVIDIWTHVNSELSNILMKTISSDDQGFNSVYMM
LDSGARGSKEQIRQLSGMRGLMAKPQKAGAEGGQIIENPILSNFKEGLSVLEYFISTHGA
RKGLADTALKTADAGYLTRRLVDVSHDVIINEEDCGTLRGLVCTDLKNNDEVIATLYERI
LGRVSVHDIIHPQTGELLVAGGEEITEDIAKKIQESPIESVEIRSVLTCESKKGVCAKCY
GRNLATNHMVQKGEAVGVIAAQSIGEPGTQLTLRTFHAGGTAANIAANASIVAKNNARLE
FEELRTVDIVDETGEAAKVVVGRLAEVRFIDVNTGIVLSTHNVPYGSTLYVADGEVVEKG
KLIAKWDPFNAVIITEATGKIEFEGVIENVTYKIESDEATGLREIIIIESKDKTKVPSAH
ILTEDGDLIRTYNLPVGGHVVIENGQKVKAGEVIVKIPRAVGKAGDITGGLPRVTELFEA
RNPSNPAVVSEIDGEVTMGKVKRGNREIIVTSKTGEVKKYLVPLSKQILVQENDYVRAGT
PLSDGATTPADILAIKGPTAVQEYIVNEVQDVYRLQGVKINDKHFEIIVRQMMRKVTIDE
PGDTRFLEQQVVDKLEFMEENDRIWGKKVVVDAGDSENLKAGQIVTARKLRDENSMLKRR
DLKPVEVRDAVAATSTQILQGITRAALQTSSFMSAASFQETTKVLNEAAINGKIDKLEGM
KENVICGHLIPAGTGLREFDKIIVGSKEEYDRILANKKTVLDYNEVE
NT seq
4284 nt
NT seq
+upstream
nt +downstream
nt
atggcttttagaaaagaaaataagatcaagagcaatttctcgaaaatctctatcggtttg
gcttctccggaagaaatccttgagaattcgagtggtgaagtattaaagcctgaaaccatc
aactatcgtacatacaaacctgagcgtgacggtttgttctgcgagcgtatcttcggcccg
atcaaagactacgaatgccattgcggtaaatataaacgcatccgttataaaggtattgtc
tgtgaccgttgtggtgtagaagttactgaaaagaaagtacgtcgcgaacgtatgggacat
atccagcttgtcgtgcctgtagctcacatctggtatttccgttcgctgcctaataagatc
ggttatttgttgggactccccaccaagaaactcgattctatcatttactacgaacgctat
gttgtcattcagccgggtgtgaaagctgaagacggtatcgccgaatttgatctgttgtca
gaagaagaatacttggatattcttgatactcttcctaaagataatcagtatctggaagat
acagaccccaacaagtttattgctaaaatgggagccgaagcgatctatgatctgcttgcc
cgtctcgatcttgatgcattatcgtatgagttgcgtcaccgtgccggaaacgatgcttcg
caacagcgtaagaatgaggctttgaagcgtcttcaggtggtagaatcattccgtgcatca
cgtgggcgtaataaacctgaatggatgattgtacgtattgtaccggtaattccgcccgaa
cttcgtccgttggttccgttggatggagggcgtttcgctacatccgatttgaacgatctt
tatcgtcgtgtgattatccgtaacaatcgtttgaaacgattgattgagattaaggctccc
gaggtgattctccgtaatgagaaacgtatgcttcaggaatctgtcgattcactgtttgat
aattcacgtaaatccagtgcagttaagactgatgccaaccgcccgttgaagtctttgtct
gacagcctgaaaggtaagcaaggacgttttcgtcaaaacttgttgggtaagcgtgttgac
tattcggcccgttcggtaattgttgttggcccggagttgagaatgcatgaatgtggtatt
cctaaactgatggctgccgaactgtacaagccgttcattatccgtaagttgatcgagcga
ggtatcgtaaagaccgtgaagtctgctaagaagatcgtggaccgtaaggaaccggtgatc
tgggatattcttgaacacgtaatgaaaggtcatccagtattgttgaaccgtgctccgaca
ctccaccgtttgggtattcaggctttccagcctaagatgatcgaaggtaaagctatccaa
ttgcacccgttggcatgtacagcgttcaatgccgactttgatggtgaccagatggctgtt
cacttgcctttgagcaacgaggcagtacttgaagcacaaatgttgatgctggcttctcac
aatattttgaatcctgcaaatggtgctcctattactgtcccttcacaggatatggtgctt
ggtttgtactatatcaccaaactccgtaaaggagcaaaaggtgaaggactcacattctat
ggacccgaagaagcgttgatagcttacaatgaaggcaaagtagatattcacgctccggtg
aaggttatcgtaaaagaccttgacgaaaatggaaatatcgttgatgtaatgcgtgagact
tcagtaggtcgtgtgattgtgaacgaaatagttccgcctgaagtcggatacatcaatact
attatttcaaagaaatcattgcgtgacattattagtgctgtaatcaaagcttgtggtgtt
gctcggactgctgacttccttgatggaattaaaaatttaggctacaagatggcttttcag
ggtggtctgtcattcaacttgggtgatatcattatcccgaaagagaaagagacactcgtt
cagagaggttatgaagaggtagagcaggtgattaataactataatatgggtttcatcacc
aataatgaacgttacaaccaggtaattgatatctggacacatgtaaactctgaattgtct
aatatcttgatgaagactatttcttcagatgatcagggtttcaactctgtgtacatgatg
cttgattccggtgcccgtggttctaaagagcagatccgtcagctctccggcatgcgtggt
ttgatggcaaaaccgcagaaggcaggtgctgaaggtggtcagatcatcgagaaccctatc
ttgtctaactttaaagagggactttctgtgttggagtactttatctctactcacggtgcc
cgtaaaggtttggccgataccgctttgaagactgccgatgcgggatacttgactcgtcgt
ctggttgacgtttcgcacgatgtgattattaatgaagaagactgcggtacgcttcgcgga
ctggtttgtactgacctcaagaacaatgacgaagttattgctactctgtacgaacgtatc
ctcggacgtgtatccgtacacgatattattcatcctcagaccggtgaattactggttgcc
ggtggtgaagaaattacagaagatatcgccaagaagattcaggaatctccgattgaaagc
gttgagattcgttcggtattgacttgcgaatcgaagaagggtgtttgtgcgaagtgctat
ggtcgtaacctggctacgaaccatatggttcagaaaggtgaggctgtcggtgtaatcgct
gcccagtctatcggtgaaccgggtacacagttgacattgcgtacattccatgctggtggt
acggctgccaacattgcggccaatgcaagtattgttgctaaaaataatgcccgtttggaa
tttgaagaactccgtacggtagatattgtggacgaaactggtgaggctgccaaagtggta
gtaggtcgtttggctgaggttcgtttcattgatgtcaatacaggcattgtactttctacc
cataacgttccttacggttctacactttatgtagccgatggtgaagtggtagaaaaaggt
aaactgattgcgaaatgggatccattcaacgctgttatcataaccgaagctaccggtaag
attgagtttgagggtgtcattgaaaatgttacttataagattgaatcggatgaagcgacc
ggacttcgagaaattattattattgagtctaaagataagactaaagttccttcggcccac
atcctgaccgaagatggtgatcttatccgtacatataatttacctgtaggtggacacgta
gtgatcgaaaacggccaaaaggtgaaagcaggtgaggtaatcgttaagattccgcgtgct
gtgggtaaggctggtgatattaccggtggtcttccccgtgttactgagttgtttgaagca
cgtaacccgtcgaatcctgccgtcgtatccgaaatcgatggagaggttactatgggtaaa
gtgaaacgcggtaatcgcgaaatcatcgttacatctaagaccggtgaagtgaagaaatac
cttgttccgctgtctaagcagattctggtacaggagaatgactacgttcgtgcaggtact
ccattgtccgatggtgctacgactccggctgatattttggctattaaaggtcctacggct
gtacaggaatacatcgtgaatgaagttcaggacgtatatcgtttacagggtgtgaagatc
aatgataagcattttgagatcattgttcgccagatgatgcgtaaagtgactattgacgaa
ccgggtgatacacgcttccttgaacagcaggtagtggacaaactcgagttcatggaagag
aacgaccgcatttggggtaagaaagtggttgtagatgccggagattctgaaaacctgaaa
gccggtcagattgtcacagcccgcaagttgcgtgacgaaaacagtatgctgaaacgccgt
gaccttaaaccggttgaggtgcgtgatgctgttgctgcaacttctacccagattcttcag
ggtattactcgtgccgcattgcaaacttcaagcttcatgtctgccgcttctttccaggag
acaactaaggtactgaatgaggctgctatcaatggtaagatagataagttggaaggtatg
aaggagaatgtaatttgcggtcatttgattccggccggtacaggtcttcgcgagtttgac
aagatcattgtaggttctaaagaagaatacgatcgtattctggctaataagaagacagtg
cttgactataatgaagtagaataa
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