Bacteroides fragilis BOB25: VU15_19315
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Entry
VU15_19315 CDS
T03897
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
bfb
Bacteroides fragilis BOB25
Pathway
bfb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bfb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
VU15_19315 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bfb03021
]
VU15_19315 (rpoB)
03400 DNA repair and recombination proteins [BR:
bfb03400
]
VU15_19315 (rpoB)
Enzymes [BR:
bfb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
VU15_19315 (rpoB)
Transcription machinery [BR:
bfb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
VU15_19315 (rpoB)
DNA repair and recombination proteins [BR:
bfb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
VU15_19315 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AKA53629
UniProt:
A0A149MW28
LinkDB
All DBs
Position
complement(4692103..4695915)
Genome browser
AA seq
1270 aa
AA seq
DB search
MSSNTVNQRVNFASTKNPLEYPDFLEVQLKSFQDFLQLDTPPEKRKKEGLYKVFAENFPI
ADTRNNFVLEFLDYYIDPPRYTIDDCIERGLTYSVPLKAKLKLYCTDPDHEDFDTVIQDV
FLGPIPYMTDKATFVINGAERVVVSQLHRSPGVFFGQSVHANGTKLYSARIIPFKGSWIE
FATDINNVMYAYIDRKKKLPVTTLLRAIGFENDKDILEIFNLAEDVKVNKTNLKKVVGRK
LAARVLKTWIEDFVDEDTGEVVSIERNEVIIDRETVIEPEHIDEIIDSGVQNILIHKEEP
NQSDYSIIYNTLQKDPSNSEKEAVLYIYRQLRNADPADDASAREVINNLFFSEKRYDLGD
VGRYRINKKLNLTTDMDVRVLTKEDIIEIIKYLIELINSKADVDDIDHLSNRRVRTVGEQ
LSNQFAVGLARMSRTIRERMNVRDNEVFTPIDLINAKTISSVINSFFGTNALSQFMDQTN
PLAEITHKRRMSALGPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLCVFA
KINDLGFIETPYRKVDNGKVDLSENGLVYLTAEEEEAKIIAQGNAPLNDDGTFIRNKVKS
RQDADYPVVEPSEVELMDVAPQQIASIAASLIPFLEHDDANRALMGSNMMRQAVPLLRSE
APIVGTGIERQLVRDSRTQIAAEGDGVIDFVDATTIRILYDRTEDEEFVSFEPALKEYRI
PKFRKTNQNMTIDLRPTCNKGDRVTKGQILTEGYSTENGELALGKNLLVAYMPWKGYNYE
DAIVLNERVVREDLLTSVHVEEYSLEVRETKRGMEELTSDIPNVSEEATKDLDENGIVRV
GARIQPGDILIGKITPKGESDPSPEEKLLRAIFGDKAGDVKDASLKASPSLKGVIIDKKL
FSRVIKNRSSKLADKALLPKIDDEFESKVADLKRILVKKLMVLTEGKVSQGVKDYLGAEV
IAKGSKFSASDFDSLDFTAIQLSDWTNDDHANGMIRDLILNFIKKYKELDAELKRKKFAI
TIGDELPAGIIQMAKVYIAKKRKIGVGDKMAGRHGNKGIVSRVVRQEDMPFLEDGTPVDI
VLNPLGVPSRMNIGQIFEAVLGRAGKNLGVKFATPIFDGATLDDLNEWTDKAGLPRYCKT
YLCDGGTGERFDQPATVGVTYMLKLGHMVEDKMHARSIGPYSLITQQPLGGKAQFGGQRF
GEMEVWALEGFGASHILQEILTIKSDDVVGRSKAYEAIVKGEPMPQPGIPESLNVLLHEL
RGLGLSINLE
NT seq
3813 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcaaatactgtaaatcaaagagttaattttgcttcgactaagaatccgcttgaa
tatccggatttcctggaagtacaattgaagtcattccaagactttctacaactagatacc
ccacctgagaagcgtaaaaaagagggattgtataaagtatttgccgaaaacttcccaatt
gccgacacaagaaacaattttgttcttgagtttctggactattatattgatccgccgcgc
tataccattgatgattgtatagagcgtgggctcacatatagtgttccattgaaagcgaaa
ctcaagctttactgtacagaccccgaccatgaggatttcgatacagtgattcaagatgtg
ttccttggtcctataccttacatgactgacaaggcaacttttgtcatcaatggtgctgag
cgtgtagttgtgtcgcagcttcaccgttctccgggcgtattcttcggtcagagtgtacat
gctaatggtacaaagttgtactcagcccgtatcatcccgtttaagggatcatggattgag
ttcgctaccgatattaacaacgtaatgtacgcttatattgatcgtaagaagaaattgcct
gttactacgctgttaagagctatcggctttgagaacgacaaggacattcttgagattttt
aacctggctgaagatgtgaaggttaataagactaatctcaagaaggtagtaggtcgtaaa
ctggctgcgcgtgtcttgaaaacctggattgaagatttcgttgatgaagataccggtgaa
gttgtttctattgaacgtaatgaagtcattatcgaccgtgaaacagtaatcgaaccggaa
catatagatgaaataattgactcgggcgttcaaaacatccttattcacaaggaagaaccg
aaccagtccgactactctattatatataatacccttcagaaggacccgagtaactcggaa
aaggaggctgtgctttatatctaccgtcagttgcgtaatgcagaccctgccgatgatgcc
agtgcccgtgaagttattaataacctgttcttctctgaaaaacggtatgaccttggtgat
gtaggtcgttatagaatcaataagaaattgaacctgacgacagacatggacgtgcgtgtc
ctcactaaagaagatattatcgagatcatcaaatatctgattgagctgattaactcaaaa
gcagatgtagatgatatcgaccacttgagcaaccgtcgcgtacgtactgtaggcgaacag
ttgtccaatcagttcgctgtcggtttggcacgtatgtcacgtaccatccgcgaacgaatg
aacgttcgtgacaatgaggtgtttactccgattgacctgatcaatgcgaagactatttct
tctgtgatcaattcattcttcggaactaacgcattgtcacagtttatggaccagacaaac
ccgttggctgaaatcactcacaaacgtcgtatgtctgctcttggtcctggtggtttgtct
cgtgaacgtgccggatttgaggttcgtgacgttcactatacacactacggacgcctttgt
ccgattgaaacaccggaaggtccgaatatcggtttgatttcgtcactttgtgtgtttgcc
aagatcaatgatctcggctttattgaaactccttaccgtaaggtagataacggaaaggta
gatctgtctgagaacggactcgtttacctgacggctgaggaagaagaagctaagatcata
gcacagggtaatgctccgttgaatgatgacggtacatttatccgtaataaggttaagtct
cgtcaggatgccgattatccggttgtagaaccttcggaagtagagttgatggatgttgct
cctcaacagattgcttctatcgctgcatctttgattcccttccttgaacatgatgacgct
aaccgtgcgttgatgggatcgaacatgatgcgtcaggctgttcctttgctgagaagcgaa
gctccaatcgtaggtacaggtattgaacgccagctggtacgtgattcacgtactcagatt
gctgccgaaggtgatggagtgattgattttgtagatgctactactattcgtattctatac
gatcgtacagaagatgaagagtttgtaagttttgagccggcattaaaagaatatagaata
ccgaagttccgtaaaacgaaccagaatatgacaatcgaccttcggccaacttgcaataaa
ggtgatcgtgtgacgaaaggtcagattctgacagaaggttattctactgaaaatggagaa
ctcgctttgggtaagaatctgttggttgcttacatgccttggaaaggttataattacgag
gatgctatcgtgttgaatgaacgtgtggttcgtgaagacttgctgacttcagtacacgta
gaagagtattcactcgaagttcgtgaaaccaagcgaggaatggaagagttgacttctgat
attcctaacgtgagtgaggaagccactaaggatttggacgagaatggtatcgtacgtgtc
ggtgcacgtattcagccgggtgatatattgattggtaagattacaccgaaaggtgaatct
gatccttctccggaagaaaaattgcttcgtgctatctttggtgataaagccggtgatgtg
aaagatgcttctttgaaagcatctccttctctgaagggggtaattattgataagaaactg
ttctcacgtgtcatcaagaatcgtagttctaagttggctgataaggcgttgcttccgaaa
attgacgatgaatttgagtctaaggtagctgacttgaaacgtatcttggtaaagaaattg
atggtattgacagaaggaaaggtatctcagggcgtgaaagactacttgggagctgaagtc
atagctaaaggctctaagtttagtgcttctgacttcgattcacttgatttcactgcgatt
cagctgagcgactggaccaatgatgatcatgcgaatggtatgattcgtgacttgatcctg
aactttatcaagaagtacaaagaacttgatgctgaactgaagcgtaaaaagttcgctatc
acaattggtgatgaactgcctgcaggtatcattcagatggcgaaagtatatattgctaaa
aaacgtaagattggtgtaggtgataagatggccggacgtcacggtaataaaggtattgtg
tcacgtgttgttcgtcaagaagacatgccgttccttgaagatggaactccggtagacatt
gtattgaacccgttgggtgtgccttctcgtatgaatatcggtcagatttttgaggctgtt
ctcggacgtgccggaaagaatttgggtgtgaagttcgctacgccgatttttgacggtgca
actttggatgacttgaacgagtggacagacaaagctggtctaccacgctattgcaaaact
tatctttgtgatggtggtacaggcgaacgctttgaccaaccagcaaccgtaggtgttacc
tatatgttgaaactcggtcacatggttgaagacaagatgcacgcacgttctatcggacca
tactcattgattactcagcaacctcttggtggtaaagctcagtttggtggtcagcgtttc
ggagagatggaggtttgggcactcgaaggtttcggtgcatcgcatattctccaggagatt
ctgacaatcaagtcggacgacgttgttggacgttctaaggcttacgaagccattgtaaag
ggcgaacccatgccacagccgggtattccggaatctctgaacgtgttgttgcacgaatta
agaggattgggcctgagcatcaatttggaataa
DBGET
integrated database retrieval system
