Bacteroides fragilis BOB25: VU15_20470
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Entry
VU15_20470 CDS
T03897
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
bfb
Bacteroides fragilis BOB25
Brite
KEGG Orthology (KO) [BR:
bfb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bfb03032
]
VU15_20470
03400 DNA repair and recombination proteins [BR:
bfb03400
]
VU15_20470
Enzymes [BR:
bfb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
VU15_20470
DNA replication proteins [BR:
bfb03032
]
Prokaryotic type
DNA Topoisomerases
VU15_20470
DNA repair and recombination proteins [BR:
bfb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
VU15_20470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
SBP_bac_3
Motif
Other DBs
NCBI-ProteinID:
AKA53823
UniProt:
F7LVF0
LinkDB
All DBs
Position
4971305..4973650
Genome browser
AA seq
781 aa
AA seq
DB search
MQKNLVIVESPAKAKTIEKFLGKDFKVLSSYGHIRDLKKKEFSIDIEKNFKPKYEIPAEK
QELVDKLKEEASKAETVWLASDEDREGEAISWHLYEVLKLKPENTKRIVFHEITKTAILK
AIEQPRDIDINLVNAQQARRILDRIVGFELSPVLWKKVKPALSAGRVQSVAVRLIVERER
EIQAFKSEASYRVTAVFLVPDADGKLVEMKAELARRLKTKKEAQKFLESCKAATFSIEDI
VTRPVKKSPAAPFTTSTLQQEAARKLGFTVAQTMMVAQKLYESGLITYMRTDSVNLSEYA
TEGSKVAIAQMMGDQYVHPRHFATKTKGAQEAHEAIRPTYMENQTIEGSAQERKLYDLVW
KRTIASQMADAELEKTTATIGISNGNDKFTATGEVIKFDGFLRVYKESYDDDNEQEDESH
LLPPLKKGQMLEHQGIVATERFTQRPSRYTEASLVRKLEELGIGRPSTYAPTISTIQQRE
YVEKGDKPGEERSFDILTLKDNQITDIKHTEIVGAEKSKLLPTDIGTVVNDFLTEYFPNI
LDYNFTANVEKQFDEIAEGDKKWTSIMKDFYKDFHPSVETTLATKTEHKVGERILGEEPK
TGKPVSVKIGRFGPVVQIGTADDTDKPRFAQMKKGQSMETITLEEALDLFKLPRKVGEFE
DKTVTIGTGRFGPYVYHNSKYVSLPKTYDPLEVTLDEAIELILAKREAEAKKHIKKFDED
AEMEILNGRYGPYIAYKGSNYKIPKDVVPVDLNYQTCLEIIKLQSEKAENAPKRGRYAKK
K
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
atgcagaaaaaccttgtcattgtcgaatctccagcaaaagcaaaaacgattgaaaagttt
cttgggaaagattttaaagtcctctcaagttacggacatattcgcgacctgaagaaaaaa
gaattttctatcgatatagaaaagaatttcaaacccaaatacgaaatacccgcagagaaa
caagagctggttgataaactgaaagaagaagcaagcaaagcagaaaccgtatggctcgca
tccgatgaggaccgggagggagaagccatttcatggcacctttacgaagtcctgaaatta
aaacctgaaaatacgaaacgtatcgtttttcacgaaatcaccaaaacagctatactgaag
gctatcgaacagccacgcgacattgacatcaacctggtgaatgctcagcaggcacgccgt
atcttagaccgtatcgtgggtttcgaactttcacctgttttgtggaaaaaggtaaaacct
gcactttctgccggtcgggtacaatcggttgccgtacgtctgatcgtagaacgcgaacgt
gagatacaggctttcaagagcgaagcttcttatcgtgtcacagctgttttcctcgtaccg
gatgctgacggcaagctggtagagatgaaagcagaactggcacgccgcctgaagacaaag
aaggaagcccaaaaattccttgaatcatgcaaggcagccacattctctatcgaagatatc
gtaacccgcccggtaaagaaaagcccggcagccccatttaccacctcaaccctacaacag
gaagctgcccgcaaactcggcttcactgtagcgcaaaccatgatggttgcacagaagctt
tacgaatcgggattaatcacctatatgcgtaccgactcggtgaatctgtctgaatacgcc
acagagggaagcaaagttgccatcgcacagatgatgggcgaccaatatgtgcatccacgc
catttcgctacgaagaccaaaggagctcaggaagcgcacgaagctatccgcccgacttac
atggaaaaccagaccatcgaaggatcggctcaagaaagaaaactatacgacctggtttgg
aaacgtaccatagcctcacaaatggcagacgccgaactggaaaagacaacggcaaccatc
ggtatcagcaacggtaacgataaatttaccgctaccggagaggtgatcaaattcgatggt
tttctgcgtgtatacaaagaatcgtatgatgacgacaatgaacaagaagacgaaagccac
ctgctgccacccctgaagaaaggacaaatgctggaacatcagggaatcgtagctaccgaa
cgtttcacacaacgtccgtcacgctataccgaagccagcctggtgcgcaagctggaggaa
ctgggaatcggacgtccgtcaacctacgcaccgaccatctctaccatccagcaacgcgaa
tatgtggagaagggggataaaccgggagaagagcgctcgttcgatatactgaccttgaaa
gataatcagattacggatatcaaacatacggaaattgtcggagcagagaaatcaaaacta
ttgccaacggacatcggcactgtagtcaatgacttcctgaccgaatacttccccaatatc
ctggattataactttacggcaaacgttgaaaaacaattcgacgagatagctgaaggcgat
aagaaatggacaagcatcatgaaggatttctataaggacttccatccttcagtagaaacg
acactggctaccaaaaccgaacacaaagtaggtgaacggattctgggagaggaacctaaa
accggaaagcccgtatcggtgaagatcggacgtttcggcccggtagtacagatcggtacg
gccgatgacacagacaagccacgctttgcacagatgaagaaaggacagtctatggagacc
atcactctggaagaggcactggacttattcaaactgccgcgcaaagtcggagaatttgaa
gataaaaccgtaacaatcggtaccggacgcttcggaccttatgtatatcataattctaaa
tatgtgtctttgcccaaaacttatgacccgctggaagtcacactggacgaagctatcgag
ctaatcctggctaaacgtgaagcggaagcgaaaaagcacatcaagaagtttgatgaagat
gcagaaatggaaatcctcaacggcagatacggaccttacatcgcttacaaaggaagtaac
tacaaaattcccaaagatgtggtaccggtcgatctgaattaccagacctgcctggaaatc
ataaaactgcaaagcgaaaaagcagaaaacgctccgaaacgcggacgctacgctaagaaa
aaatag
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