Bacteroides faecium: BacF7301_22165
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Entry
BacF7301_22165 CDS
T08751
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
bfc
Bacteroides faecium
Brite
KEGG Orthology (KO) [BR:
bfc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bfc03016
]
BacF7301_22165
Enzymes [BR:
bfc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
BacF7301_22165
Transfer RNA biogenesis [BR:
bfc03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
BacF7301_22165
Prokaryotic type
tRNA splicing ligases
BacF7301_22165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QIU96686
UniProt:
A0A6H0KTA3
LinkDB
All DBs
Position
complement(5837995..5839392)
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AA seq
465 aa
AA seq
DB search
MGIRLKDLSKLGYRDNVARSLVVDIVSKHCKHATKEQIEKTLSDILEHPESYKNNEIWNK
LAERLSPTVIAKDFRAYDLSDEPLMYKTYGGKFIETLAKQQMNLAMRLPVTVAGALMPDA
HAGYGLPIGGVLATDNAVIPYAVGVDIGCRMSLTVFDAGADFLKRYSYQMKEALKDFTHF
GMDGGLGFEQEHEVLDREEFRLTPLLRDLQGKAVRQLGSSGGGNHFVEFGEIALQEHNVL
NLPEGNYVALLSHSGSRGLGAAIAKHYSLLAREVCRLPREAQHFAWLDLDSEAGQEYWMS
MNLAGDYARACHERIHLNLAKALGLKPLANVNNHHNFAWKEEIAPGRMAIVHRKGATPAQ
EGQPGLIPGSMATAGYLVCGKGVEDALNSASHGAGRAMSRQKAKDSFTQSALKKMLSQAG
VTLIGGSVEEMPLAYKDIDRVMHTQETLVEVQGRFMPRIVRMNKE
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atgggaatacgattaaaagatttaagtaaactgggataccgggataatgtagctcgtagt
ctggtagtggatattgtaagcaaacattgcaaacatgccaccaaagaacagattgaaaag
acattgagcgatatactcgaacatcccgaatcttataaaaacaacgaaatttggaataag
ctcgccgaacgcctttcgcccactgtgatagcgaaggactttagggcttatgatttatcg
gacgagccgctgatgtataaaacctacgggggaaaattcattgagacgctcgccaaacaa
caaatgaacctggcgatgcgtctgcctgtaacggtagccggagcattgatgcccgacgcc
cacgccggctacggattgcctatcggcggggtgcttgccacggacaatgcggtgattccg
tatgccgtaggagtcgacatcggctgccggatgagcctgacggtatttgatgccggtgcg
gatttcttgaaacggtattcgtatcagatgaaggaagccttgaaggatttcacccatttc
ggtatggacggcggattgggctttgagcaggaacatgaagtgttggacagggaagaattc
cggctgactcctttattgagggatttgcagggaaaggcggtacgccagcttggaagttcc
ggtggtggaaaccattttgtggagtttggagaaattgctctgcaagagcataatgtgttg
aatcttcccgaagggaattatgtggctttgttgtcgcattccggttcgcgcggactggga
gccgccattgccaaacattacagcctgttggcgcgtgaagtatgccggcttccccgtgaa
gcgcagcatttcgcctggctggacttggattccgaagcagggcaggagtattggatgagc
atgaacctggcaggcgactatgcccgtgcctgtcacgaacggattcatctgaacctggcg
aaagcattgggattgaagccgcttgcgaatgtcaacaatcatcacaactttgcctggaag
gaagaaattgctccgggacgtatggcaatcgtgcatcgcaaaggggctactccggcacaa
gaaggacaaccgggattgattcccggcagcatggctacggcaggatacctcgtttgtggc
aagggagtggaagatgctttgaattctgcttctcacggtgcaggcagagccatgtcccgc
caaaaggcgaaggacagctttacgcagtcggctttgaaaaagatgttgtcgcaagccgga
gtgactttgattggcggaagtgtggaagaaatgccgttggcatacaaggacatcgaccgg
gtgatgcatacacaggagacgctggtggaagtgcagggtagatttatgcctcgtatcgta
cgaatgaataaggagtga
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