Bacillus freudenreichii: NCTC4823_01742
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Entry
NCTC4823_01742 CDS
T06767
Symbol
recD
Name
(GenBank) RecD/TraA family helicase
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
bfd
Bacillus freudenreichii
Pathway
bfd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bfd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
NCTC4823_01742 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bfd03400
]
NCTC4823_01742 (recD)
Enzymes [BR:
bfd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
NCTC4823_01742 (recD)
DNA repair and recombination proteins [BR:
bfd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
NCTC4823_01742 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_30
AAA_19
HHH_RecD2
OB_YrrC
SH3_13
UvrD_C_2
Viral_helicase1
AAA_11
AAA_22
HHH_5
AAA_12
UvrD-helicase
AAA_5
UvrD_C
AAA_16
AAA_17
AAA
nSTAND3
AAA_28
NPHP3_N
T2SSE
DEAD
NTPase_1
TsaE
Motif
Other DBs
NCBI-ProteinID:
VEF47694
LinkDB
All DBs
Position
1:1796369..1798762
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AA seq
797 aa
AA seq
DB search
MESLDLFSEDEKYIKGRHLVTIFHNEQNLYSVVRIKVDETNEEFKEKEAVVTGYFPKIHE
QETYIFYGGLKDHPKFGLQFHAKHFKKEMPQTKQGLVMYLSSDLFQGIGKKTAERIVEAL
GENAISIILSKPSVLDEIPRVSPDAAKNLYEALLEHQGLEQVMIGLNKYGFGPQISMKIY
QAYKEDTLSIIEKNPYQLIEDVEGIGFGRADELGIQLGIVGNHPDRIKAGCLYVLEQQCL
QNGHVYLEAEQLLEQVKQLLESSQAVEIPFQSIADVMVQLKEESKIVGEDKRVYMPSLYF
SEKGLVTNIREIMDQAQYADQFPESEFLLALGKLEERLGVQYAPSQKEAIQTALTSPLMI
LTGGPGTGKTTVIKGIVELYAELHGCSLDPHAYKREDVFPFILAAPTGRAAKRMAESTGL
PAMTIHRLLGMTGQESLDSEGDREIEGHIIIIDEMSMVDTWLAHQLFKSLPESIQVILVG
DEDQLPSVGPGQVLKDLIASNTLPVVQLTDIYRQADGSSIVELAHEIKGGNLPADVTLQK
KDRSFIKCQAPQIGEVVEQVVRNALQKGFTARDIQVLAPMYRGPAGIDNLNKILQEVFNP
KKEKRNKEFTFGEVKYRIGDKVLQLVNQPEKNVFNGDIGEIISILYAKENVEKQDMIIVS
FEGTEVTYFRQDFNQITHAFCCSIHKSQGSEFPIVILPVVRSYYRMLRRNLLYTAITRSK
KFLILCGEESAFRTGIQREDDQKRQTTLREKLAGIAEVPVAVKAGTDMHEEMSYEDKLFM
ADPMIGMENVSPYDFLD
NT seq
2394 nt
NT seq
+upstream
nt +downstream
nt
atggaatcattggatcttttttccgaagatgaaaagtacataaagggccggcacctcgtt
accatttttcataatgagcaaaacctatattctgttgtaaggatcaaagtggacgagacg
aacgaggaatttaaggaaaaggaagcggttgtcaccggttatttcccgaaaatccacgaa
caggaaacatatattttttatggcggattaaaagatcacccgaaatttggtctccagttt
catgctaagcatttcaagaaagagatgcctcagacgaaacagggccttgtgatgtatcta
tccagtgatttatttcaaggtattggcaaaaaaacggccgaaaggattgttgaagctctt
ggggaaaatgccatcagtattattttgagcaaaccgtctgttcttgatgaaataccacgc
gtttctcctgatgctgcgaaaaatttgtatgaagccttgcttgaacatcaggggcttgag
caggtcatgattggattgaacaaatacggtttcggtccgcaaatctccatgaaaatatac
caggcatataaagaagatacattgtccattattgaaaagaatccatatcagctcatagaa
gatgttgaaggtattggttttggaagggctgacgaactgggaatccaattaggtatagtt
ggtaatcatccggacaggatcaaagctggctgcctatatgttctcgagcagcagtgcctg
caaaatggacatgtctatttggaagctgaacagcttcttgaacaagtgaaacagctttta
gaaagcagccaagctgtagagattccttttcagtcaatagccgatgtcatggtccaattg
aaagaagaaagcaaaattgttggtgaggacaaacgtgtttacatgccatccctatatttt
tcggaaaaaggtcttgtgacgaatatccgggaaatcatggaccaagcacaatacgctgat
caatttcctgaatcggaatttttattggcgcttgggaagttggaggagaggttgggcgtc
caatatgcgccatcgcaaaaagaagcgattcaaacagctttgacaagcccgctgatgatt
ttgacaggcggaccgggaacaggaaagacaacggttatcaaaggaattgtcgagttgtat
gccgagcttcacggctgttcccttgatccccatgcgtataaaagggaggacgtttttcca
tttatactggcggctccgacagggcgcgcagcaaaaaggatggctgaatcaacggggctt
cctgcgatgaccatccataggctccttggcatgacaggccaagaaagtctggactctgaa
ggtgatcgcgagattgaagggcatattattattattgatgagatgtcaatggtggatact
tggctggcacatcaactttttaaatcgttgcctgaatccatccaggtaattcttgtgggg
gatgaagatcaacttccatcagtcggacccggacaggttcttaaggatctgattgcatct
aacacgctgcctgttgtccagttgacggatatttaccgtcaggcggatggatcgtcgatt
gttgaactggcacatgaaattaagggcggtaaccttccggcagacgtaactttacagaag
aaggaccgttcttttattaagtgccaagctccgcaaattggggaagttgtcgagcaggtt
gtaagaaatgcacttcaaaaaggatttacggcaagagatatacaggtgcttgcccccatg
tatcgcggcccagctggaattgataatttaaataagattttacaggaagttttcaatccc
aagaaggaaaaaagaaataaggaattcacttttggagaagtgaaatacaggattggagat
aaagtgctccagcttgttaaccaacccgaaaaaaatgtttttaatggagatattggggaa
atcatttccatactatacgcaaaggaaaatgtggaaaagcaggatatgatcattgtctca
tttgaagggacggaagtgacttatttcaggcaggattttaatcaaattactcatgctttt
tgctgttcaatccacaaatcccaaggtagtgaatttccgattgtcatcctacctgttgtg
agaagctattatcgcatgcttcgaaggaatttattgtataccgctatcacccgaagcaag
aagtttttgattttatgcggggaagaaagtgcattccgtacgggcatccagcgggaagat
gatcaaaaaagacaaacaacattgcgggaaaagcttgcagggattgcagaagtgcctgtt
gcagtgaaagcaggaacagatatgcatgaggaaatgtcctatgaggataagttgttcatg
gcagaccccatgattggcatggaaaatgtttcaccttatgatttcctcgattga
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