Bacillus freudenreichii: NCTC4823_03206
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Entry
NCTC4823_03206 CDS
T06767
Symbol
yjcD
Name
(GenBank) UvrD/REP helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
bfd
Bacillus freudenreichii
Pathway
bfd03420
Nucleotide excision repair
bfd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bfd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NCTC4823_03206 (yjcD)
03430 Mismatch repair
NCTC4823_03206 (yjcD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bfd03400
]
NCTC4823_03206 (yjcD)
Enzymes [BR:
bfd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NCTC4823_03206 (yjcD)
DNA repair and recombination proteins [BR:
bfd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NCTC4823_03206 (yjcD)
MMR (mismatch excision repair)
Other MMR factors
NCTC4823_03206 (yjcD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
nSTAND3
Tipalpha
AAA_11
DEAD
Mad3_BUB1_I
ABC2_membrane_3
Motif
Other DBs
NCBI-ProteinID:
VEF49094
LinkDB
All DBs
Position
1:complement(3268327..3270486)
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AA seq
719 aa
AA seq
DB search
MSIDFFDRKETETGVILNEVQKQAVLHTEGPLLLLASPGSGKTTTIIMRIGYLIQEKKVA
PSRIKAVTFSRASANDMKERFRLFYPEVPPVDFSTIHSLAFETVREQLYKERVDWQIIEG
NTEDGLHKKLILRKLFESEVGETITEDQLEELMTYISFIKNKLIPQKDWSSVKCTVPKAA
KIFRKYEKFKQTGHHKLLLDFDDMLTMANDIFENESELLRKYQSKYDYILTDESQDTSLV
QHQIIEKLAREHQNLCVVADDDQSIYSWRGAEPSYLLDFKKTYPNAVVLFMEQNYRSSKD
IVKTANEFIKQNKNRYAKNMYTKNPSLKPIIFKKFSDYKSQAKYLVKETIEEGNLSEIAV
LYRNNSSSIALMNEFDRAGIPFFMKDADNRFFSHWVVDDILNFMRMTFTDKRPDILEKIY
TKLNGYITKKQMLAVKQIRNNESVFDNLVNYAQLKDYQVTKIKENKETIEQMKGMPPLHA
IHVIRDRLGYEKAIERMCERLGFRKEYLVGILNTLEEIAKDLKSMEEFAARLKHLESTLR
TSKFKKDENAVTFSTFHSAKGLEFEKVYMIDLIDGVIPSADDKKGDMEEAVRLFYVGMTR
AKRHLELISYQQRDGAKEMESQFVSDVWNIIHPPKKIESKGSERHGVVKKEYTKPDTAIN
PNAIRVQSALQSGMTVKHRVFGTGTITNLDQETISIQFSKQEKALSVEMCLERGLLEQV
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atgtccattgattttttcgaccgtaaggaaacggaaacaggcgtgatcttaaatgaagtt
caaaaacaggcagtgcttcacacggaagggccattgctactgttagcttcgcccggatca
ggtaagacaacgacgattatcatgaggatcggctatcttatacaggagaagaaagtagcg
ccttcccgcataaaagcagtcactttcagccgggcatcagccaatgatatgaaagagcgc
ttcaggctgttttacccggaagttccgccggtggacttttccacgatacatagtctcgct
tttgaaacggtcagggagcagctgtacaaagagcgggtcgactggcaaattattgaaggt
aatacggaagacggtttacacaagaaattgattttacggaagctgtttgaatccgaagtt
ggtgagacaataaccgaggatcagctcgaagaactcatgacgtatatcagctttattaaa
aataaattgattccgcaaaaggactggtcatcggtcaagtgcacagtcccgaaagcggcg
aagatttttcggaagtatgaaaaattcaagcagacgggacatcacaaattgttgcttgac
tttgatgacatgctgacaatggcaaacgatatttttgagaatgagagtgaacttctgagg
aaatatcaaagcaaatatgattatatattgacagatgagagtcaagatacgtcgttggtg
cagcatcaaatcattgaaaaactggcaagggagcatcagaatctgtgtgtggtggctgat
gatgatcagtcgatctacagctggcggggagcggagccgtcttatttattggatttcaag
aagacttatccgaatgcggtagttttgttcatggagcagaattatcgatcttccaaggat
atcgtgaaaacggccaacgaatttattaaacagaataaaaaccgttatgccaaaaacatg
tacacgaaaaatccttcgttaaagcctattatatttaaaaaattttcagattacaagagt
caagcaaaatatttggtgaaagaaaccatagaagagggaaatttgtcggaaattgctgtt
ttgtacaggaacaattcatcgtcaattgcattgatgaatgaatttgatcgggcgggaatc
ccttttttcatgaaagatgcggacaatcgctttttttcccactgggtcgtcgatgatata
ttaaatttcatgaggatgacttttacggacaagcgtccggatattctggaaaagatttat
acgaaactcaatggatatattacaaaaaagcaaatgctcgcagtcaagcaaatcagaaat
aacgaatctgtttttgataatctggtcaactacgcccaattgaaggactatcaggtgaca
aagataaaggagaacaaggagactatcgagcaaatgaaaggcatgccgccgctgcatgca
attcatgttatccgggataggctaggctacgaaaaggctattgaaagaatgtgtgagcgg
ctcggattccgaaaagaatatttggtcggtatattaaatacacttgaggaaattgccaag
gatcttaaatcgatggaggaattcgctgcaaggttaaaacatctggaatcgacattgagg
acctctaaattcaagaaggacgaaaatgcagtgacgttttcaaccttccacagcgcgaaa
ggcctggagtttgaaaaagtgtacatgattgatttgatcgacggtgtcatcccatcggct
gatgataagaaaggcgacatggaagaagctgtccgtttgttttatgtcgggatgacccgg
gctaaaaggcatttggaacttatttcgtatcaacagagggatggagcaaaagaaatggaa
tctcagtttgtcagcgatgtatggaatattatccatccgccaaagaagattgagtccaaa
ggttcggaacggcacggtgttgtaaaaaaggagtacactaagcctgatactgccatcaat
ccaaacgcaatccgtgtccaatctgcactgcagtctggcatgacagtgaagcacagagta
tttgggacgggcacgattactaatttagaccaagaaacaatcagcattcagttttccaag
caggagaaggcgctctctgttgaaatgtgtctggaacgtgggttgttggagcaggtgtga
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