Bacillus freudenreichii: NCTC4823_03606
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Entry
NCTC4823_03606 CDS
T06767
Symbol
cshA_2
Name
(GenBank) DEAD/DEAH box helicase domain-containing protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bfd
Bacillus freudenreichii
Pathway
bfd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bfd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC4823_03606 (cshA_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bfd03019
]
NCTC4823_03606 (cshA_2)
03009 Ribosome biogenesis [BR:
bfd03009
]
NCTC4823_03606 (cshA_2)
Enzymes [BR:
bfd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NCTC4823_03606 (cshA_2)
Messenger RNA biogenesis [BR:
bfd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NCTC4823_03606 (cshA_2)
Ribosome biogenesis [BR:
bfd03009
]
Prokaryotic type
rRNA helicases
NCTC4823_03606 (cshA_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
VEF49469
LinkDB
All DBs
Position
1:complement(3707588..3709033)
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AA seq
481 aa
AA seq
DB search
MTKFSDLNLSPSILKAVNRMGFEEATPIQAKTIPLSMEGKDLIGQAQTGTGKTAAFGIPL
IQKIDPSDHTVQGIIIAPTRELAIQVSEELYKIAIDSRVRVLAVYGGSDIQRQIRALKKG
PQIVVGTPGRVLDHINRRTLKLGNVHTVILDEADEMLNMGFIEDIESILKTVPEERQTLL
FSATMPEPIRRIAERFMKSPELVKVQAREMTVPLIEQFFVKVPEREKFDVLSRLIDVQSP
ELAIVFGRTKRRVDELSNALTVRGYTAEGIHGDLSQAKRLSVLRKFKEGKVDVLVATDVA
ARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAVTFVSPREMGYLRIVEQTTK
KRMQPLRPPTWDEALEGQQRVTMEKLAETIEEGNLDEYRSTAVDLLNEHDAVEVIAAALK
VITKEPDKTPVHITEERPLPSKRDSFQGGDRGGRGRRGKPGGQSSYKGHRKSQRRSGNRR
P
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
ttgacgaagttttcagatttaaatttgagtccgtctattttaaaagcagtcaatagaatg
ggctttgaagaagcaacaccgatacaggcaaaaacgattccactaagcatggaagggaag
gatttaatcgggcaagctcaaactggtactggaaaaacagcggcgtttggaattcctttg
attcaaaaaattgatccgagcgatcacacggtccaagggatcatcattgctccgacgcgt
gaactggctatccaggtttcagaggagctatataaaattgccatcgacagccgggtgaga
gtgcttgcagtttatggcggatctgatattcagcgccaaatcagggctttgaaaaaaggt
cctcagattgtcgttggaacgcctggacgtgtccttgaccatattaaccgccggacactg
aaattgggcaatgtccatacagtaattctcgatgaagcggatgaaatgctgaacatgggc
tttatcgaagacattgaatcgattttgaaaacagtccctgaggaaaggcaaacattgctt
ttttctgctacaatgcccgaaccaattcgccgaattgccgagcgtttcatgaagtcgcct
gaactagttaaggttcaagcgagagaaatgactgttccattgatcgaacaattttttgtg
aaagtgccggaaagagagaaatttgatgtcctttcacgattaattgacgtgcagtctccg
gaattggccattgtttttggtcggacgaaacgccgtgtggatgagttgtccaacgctttg
actgttcgcggatacactgcggaaggaatccacggcgatttgagccaggcgaaacgcttg
tctgttttacgtaagttcaaagaaggtaaagtggatgttcttgtagcgaccgacgtggca
gcgcgtggattggacatttcaggtgttacccatgtgtataactacgacattccacaggat
cccgaaagctacgtccatcgtatcgggcgtacagggcgtgccggaaaagaaggaatggcc
gttacattcgtcagcccacgtgaaatggggtacctgcgcatcgttgagcaaacaacgaaa
aagcggatgcagccattgcgcccgccaacttgggacgaagcgctcgaaggccagcaacgt
gtgacaatggaaaaattggctgagacgattgaagaaggcaacctggatgaatacaggtcc
acagctgttgacttgctgaacgagcacgatgctgtggaagtcattgcagctgcattgaaa
gtaatcactaaggagcctgacaaaacgccagtacacatcactgaggaaagaccgctccca
tccaaacgggattctttccagggtggagaccgaggcggacgaggcagaagaggaaagccg
ggcggccagtcatcatataaaggccaccgcaaatcccagcgccgctcagggaatcggaga
ccataa
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