Bacillus freudenreichii: NCTC4823_04103
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Entry
NCTC4823_04103 CDS
T06767
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bfd
Bacillus freudenreichii
Pathway
bfd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bfd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NCTC4823_04103 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bfd03021
]
NCTC4823_04103 (rpoC)
03400 DNA repair and recombination proteins [BR:
bfd03400
]
NCTC4823_04103 (rpoC)
Enzymes [BR:
bfd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NCTC4823_04103 (rpoC)
Transcription machinery [BR:
bfd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NCTC4823_04103 (rpoC)
DNA repair and recombination proteins [BR:
bfd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NCTC4823_04103 (rpoC)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_3
RNA_pol_Rpb1_2
RNA_pol_Rpb1_4
DHC_N2
Motif
Other DBs
NCBI-ProteinID:
VEF49943
LinkDB
All DBs
Position
1:complement(4232413..4236009)
Genome browser
AA seq
1198 aa
AA seq
DB search
MLDVNNFEYMKIGLASPDKIRSWSFGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLLLDM
SPRALEEIIYFASYVVTDPGDTTLEKKQLLSEREYRAYREKYGTTFNAGMGAEAIKKLLQ
DIDLDKEVDILKEELKTAQGQRRTRAIRRLEVLEAFRHSGNYPDWMVLDVLPVIPPELRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPGIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPSLKMYQCGLPKE
MALELFKPFVMKELVEKGLAHNIKSAKRKIERVHPEVWDVLEEVIREHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARMLMLAAQNIL
NPRDGKPVVTPSQDMVLGNYYLTLEREGATGEGMVFGNADEALLAYNNGYIHLHSRIAIH
VESLQNERFTDEQRKKLLVTTMGKIIFNEIMPPSFPYINEPTNENLEQNIPDKYFVDTTE
NVAEFIKKQPLVKPFKKKILGNIIAEIFKRFQITETSKMLDSMKDLGFKYSTKAGITVGV
SDIVVLAEKETLLEEAQTKVDNVLKQFKRGLITDEERYDRVISIWSAVKDEIQDKLMESL
ENLNPIYMMSDSGARGNPSNFTQLAGMRGLMANPAGRIIELPIKSSFREGLTVLEYFIST
HGARKGLADTALKTADSGYLTRRLVDVAQDVIVREDDCGTDRGLLVSALKDGTEEIESLE
ERLIGRFSRKKILHPDTDDVIINENTLITEDTAKEIVNAGLEKVWIRSAFTCNTRHGVCK
KCYGRNLATGSVVDVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQELF
EARNPKGQAVITEISGVVTAINEGRDRQHEIVVQGDIESKTYNAPYTARLRVAVNDRVER
GQELTEGSIDPKELLRAKDVAAVQEYLLLEVQKVYRMQGVEIGDKHIEVMVRQMLRKVRV
TDAGDTDVLPGTLLDIHQFTDANEKVLIEGSTPATGRPVLLGITKASLETDSFLSAASFQ
ETTRVLTDAAIKGKRDELLGLKENVIIGKLVPAGTGMQRYRRASAVLKREEDDTVNVE
NT seq
3597 nt
NT seq
+upstream
nt +downstream
nt
ttgctggatgtaaataatttcgagtatatgaaaatcggtctcgcttcgcctgataagatc
cgttcatggtcttttggtgaagtgaaaaagccggagacaattaactatagaactttaaag
ccagaaaaagacggtcttttctgcgagcggattttcggtccgactaaagactgggaatgc
cactgcggaaagtacaaacgggtacgttataaaggtgtcgtttgtgaccgctgtggagtt
gaagtgacgcgggcgaaagtccggcgtgagcgtatggggcacattgagcttgctgcccct
gtctctcacatttggtacttcaaaggaattccaagcagaatgggacttcttttggatatg
tcgccccgagcacttgaagaaattatttattttgcctcttacgtagtgacagatccggga
gacactacgctcgagaagaagcaacttttatctgaaagggaatatcgtgcttaccgggaa
aagtacggaacaactttcaatgctggaatgggtgcagaggccattaaaaagctgcttcag
gatattgatttagataaagaagtagacatactgaaagaagaactaaagacggcacaagga
cagcgccgtacacgtgctatcagacgacttgaagtcttggaagcattccgtcattccggc
aactatcctgactggatggttttggatgtacttccggtcattccgccggaactgcgccca
atggttcagttggaaggcggccgattcgcgacatcggatttgaatgatctataccgccgt
gtaattaacaggaacaaccgtctgaaaaggttattggatcttggtgctccaggcatcatc
gtccaaaatgaaaagcggatgctccaggaagctgtcgatgcactcatcgataacggacgc
cgcggccgtccggtcacaggaccagggaaccgcccgctcaaatctctttctcatatgctg
aaagggaaacagggacgattccgccaaaacctgctcggtaagcgtgttgactactcaggc
cgttcggttatcgtagttggacctagcctgaaaatgtatcaatgcggtcttccgaaggaa
atggcattggaactgttcaagcctttcgtcatgaaagaattggtggaaaaaggccttgca
cataatattaaaagcgcgaagcgcaaaattgagcgcgttcatccggaagtctgggatgta
cttgaagaagtgatccgtgagcatccggtattattgaaccgtgcaccgacattgcacagg
ctcggaatccaagcatttgagccgactttggtcgaaggaagggcgattcgccttcatccg
ctcgtctgtacggcttataatgcggactttgacggagaccaaatggccgttcacgtgcca
ttatcggctgaagcacaagctgaagcaagaatgctgatgcttgctgcccagaacatcctg
aacccaagggacggaaaaccagttgttacaccttcacaggatatggttcttggtaactat
tatctgacgcttgagcgtgaaggcgcgactggtgaaggcatggtcttcggcaatgcagac
gaggcgcttttggcatataacaacggttatatccacctgcattcacggattgcgatccat
gtagaatctctccaaaatgagagatttactgatgagcagcggaagaaattattggtaacg
acaatgggtaaaatcatttttaatgagattatgccgccatcgttcccatatattaatgag
ccgaccaacgaaaaccttgagcagaacattccagataagtatttcgttgacacaacagaa
aatgttgcggaattcattaaaaaacagccgctggtcaaaccattcaaaaagaaaattctt
gggaatattatcgccgagatttttaaaaggttccaaattactgagacatccaaaatgctc
gacagcatgaaggatctcggatttaaatactctacaaaagcgggaatcactgttggtgta
tccgatatcgtagttcttgctgagaaggaaacactccttgaagaagctcaaacgaaggtc
gacaatgtcctgaaacagttcaagcggggtctgatcacagatgaagaacgctatgaccgc
gtaatttccatctggagtgccgtaaaagacgaaattcaggataagctgatggagtctctt
gagaatcttaatccgatttacatgatgagtgattcaggtgcgaggggtaacccatccaac
ttcactcagttggcgggtatgcgcggattgatggccaacccggctggacggattatcgaa
cttccaatcaaatcgagcttccgggaaggattgacggtactcgagtactttatctctacc
catggagcgcgtaaaggattggcggatacagctctgaaaacagctgactcaggttatttg
acaagaaggcttgttgacgtcgcccaagacgtcatcgtgcgtgaagatgattgcggtacg
gatcgaggactccttgtttcagctcttaaagatggaacagaagaaatcgaatccttggaa
gaaaggctgattggccgcttcagccgcaagaagattctccatccggatacagatgatgta
atcattaatgagaacacgcttattacggaagacacggctaaagaaattgtcaatgccgga
cttgaaaaagtttggatccgctcagcatttacatgtaacacccgtcatggtgtctgtaag
aagtgctatggccggaacttggcgacaggctcggtagtcgatgtcggggaagcggtggga
atcatcgccgcccagtcaattggagagccaggaacccagctgacgatgagaacgttccat
acaggaggagttgccggagacgacatcactcaaggtcttccgcgtatccaggaattgttc
gaagcccggaatccaaaagggcaggctgtcattaccgaaatcagcggggtggttactgct
atcaatgaaggcagagaccgccagcatgaaattgttgtccaaggggatatcgaaagtaaa
acatacaatgcgccgtacacagcccgcctgcgtgtagcagtgaatgaccgggtcgagcgt
ggacaggaattgaccgaagggtccatcgatccgaaggaattgctgcgcgctaaagatgtg
gccgccgtacaagagtatcttttacttgaagtacaaaaagtttaccggatgcagggtgtt
gagatcggcgacaagcacattgaagtgatggtccgacaaatgctgcgcaaagtaagggtg
acagacgcaggggacacggatgtactgccgggaacattgctcgatattcatcagtttaca
gatgcgaatgaaaaggtgctgattgaaggaagtacgccggcaaccggacgcccggtattg
ctaggtatcacaaaagcatcgcttgaaacagattccttcctatcagcggcatctttccag
gaaacaacacgcgtgttgacagatgcagccatcaaaggcaagcgtgatgaactgcttggc
ttgaaggaaaacgtcattatcggaaaactggttccggcgggaactggaatgcagcgctat
agaagagcgagcgcagtattgaaaagagaagaagatgacacagtcaacgtagaataa
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integrated database retrieval system
