Bacillus freudenreichii: NCTC4823_04158
Help
Entry
NCTC4823_04158 CDS
T06767
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bfd
Bacillus freudenreichii
Pathway
bfd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bfd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NCTC4823_04158 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bfd03400
]
NCTC4823_04158 (mfd)
Enzymes [BR:
bfd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NCTC4823_04158 (mfd)
DNA repair and recombination proteins [BR:
bfd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NCTC4823_04158 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
MFD_D3
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
VEF49993
LinkDB
All DBs
Position
1:complement(4292050..4295571)
Genome browser
AA seq
1173 aa
AA seq
DB search
MQGLRKLILQQNELQSVIDGVKEGIGEQLVAGLSGSMRTLFIAAAAKETDKSLIVVTHNL
LQAQKLYEDLSQLVEEDQLFLYPANELIASELGVASPELRSQRIETLNHMVSGRQGVFVV
PMAGLRKALPPSTVWKKLQLHIEMGSELDLEKELPLLVQMGYSRSDMVSAPGEFSLRGGI
LDIYPLTEEDPVRIELFDVEVDSIRTFSIEDQRSKEKLSHVIIGPATESPVDAVQLSRAA
EQLEKSLSSSLKKVKKEMTKEQLMQNIKADIEKMRNGQKPEQFFKYTQLAYEPSVSLLDY
VSSDSLLIFDELSRIQEMNERLEKEEAEWFMSVLEHGEITHDLKLAHSLNELLAETSLPR
IYLSLFLRHIPNTSPQNIANVPCKLMQNFHGQMHLLVAEVERWRKNEMSVVFLAPDEERS
QKMQSVLRDYGVEAAISEKPGRFAGVQIVRGALNTGFELPSLKLAVITEEEVFNKKTRKM
KRRQKLSNAERIKSYSELNPGDYVVHVNHGIGKYLGIETLMIKGVHKDYLHISYQGNDKL
YVPVDQIELVQKYVGSEGKDPKMYKLGGNDWKRVKKRVESSVKDIADELIKLYAEREATK
GYAFAPDSDMQREFELSFPYQETDDQLRSIVEIKRDMERERPMDRLLCGDVGYGKTEVAI
RAAFKAIMDGKQVAVLVPTTILAQQHFETIKERFNGYPINISLLSRFRTKKQQTETTKGL
KNGTIDLVIGTHRLLSKDIKFADLGLLIVDEEQRFGVTHKEKIKQLKTNVDVLTLTATPI
PRTLHMSMLGVRDLSVIETPPENRFPVQTYVMEYNGIFVKEAIERELARDGQVYFLYNRV
EDIERKAEEISMLVPDARVAYAHGQMGESELEAVILSFLDGEFDVLVTTTIIETGVDIPS
VNTLIVHDADRMGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLTEIAEKRLQAIKEFTEL
GSGFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERKGGAPATAPLFEV
ELELDAYIPDAYIGDSQQKIEMYKRFRNIESLEEVEELKEEMIDRFGDYPEQVSYLFTVA
EMKVHARAIKLTSIKQSKGEVVIYFSEEGTNEIDGSKVFQVTNRYGRIVGLGMEGSQLKI
SLQINRLSTDEWLSIASDIIVELKTARKAEATV
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgcaaggtttacgaaaactaatattacagcaaaatgagctgcagtcagtgattgacggc
gtcaaggaaggaataggcgagcagcttgttgcagggctttcagggtcgatgaggaccttg
tttattgctgcagcagctaaagaaacggataaatcactgattgttgtcactcataacctg
cttcaagcgcaaaaactttatgaagatctttcacaactggttgaagaggaccaattgttt
ttataccctgcaaatgaactgatagcgtccgaactcggtgtagcaagcccggagctcagg
tcacaacggattgagacacttaatcatatggtgtccggccgccagggtgtttttgtcgtg
cccatggccggacttagaaaagctttgccgccctcaactgtatggaaaaagcttcagctt
catattgaaatgggttcagagctggatctggaaaaggaactcccactccttgtccaaatg
ggatatagccgttcggacatggtaagtgcaccgggggaattcagtctgcgtggggggatt
ttggatatttatccgctgactgaggaggaccctgtcagaatagaactctttgatgtggaa
gttgactcaataagaactttttccatcgaagaccaacgatcaaaggaaaagctgtcacat
gttatcatcggaccggcaacagagtcgcctgttgatgctgtacagctgtcccgtgcggcg
gaacagcttgaaaaaagcttgagcagttctttaaagaaagttaaaaaagaaatgacaaaa
gaacagctgatgcaaaatattaaagctgatattgagaaaatgcgaaatggccaaaagcct
gagcaattttttaagtatacgcaattagcctatgagccgtctgtaagtttgctagattac
gtttcttccgacagtctgttaatatttgacgaattgagccggatccaggaaatgaacgag
cggttggaaaaggaagaggcggagtggttcatgtctgtcctggaacatggggagatcacc
catgacttgaaacttgctcattcccttaatgaacttttggcagaaacctctttgcctcgg
atttatttatctttgtttttacgtcatattcccaatacaagcccgcaaaacattgcaaat
gttccttgcaagctgatgcaaaactttcacggacagatgcatttgcttgttgccgaagtg
gagcgttggagaaaaaatgagatgtctgttgttttcctggcacccgatgaagagcgcagc
caaaaaatgcagtccgttttgcgtgattatggggtggaagcagctatttcggagaaaccg
ggcaggtttgccggtgtacaaattgtaagaggtgccttgaataccggatttgagctgcca
tcattaaagctggctgttataactgaggaagaagtcttcaataaaaaaacaagaaaaatg
aaacgccgccaaaaattgtccaatgccgagcggatcaaaagctattccgaattgaacccg
ggggattatgttgttcatgtaaatcatgggatcggaaagtatttaggcattgaaacgttg
atgatcaaaggcgtccacaaagattacttgcacatttcctaccaggggaacgataagctg
tacgttccggtggatcaaattgagcttgtccagaaatacgtcggatctgaaggtaaagat
ccgaaaatgtacaagcttggcggaaatgactggaagcgtgtcaaaaaacgcgtagagtca
tcagtcaaggacatagctgatgaacttatcaaactatatgcggaaagggaagcgacaaaa
gggtacgcatttgcaccggacagcgatatgcagcgggagtttgaattatcattcccttat
caggaaacggatgatcagctaaggtcgattgttgaaatcaaacgtgatatggaaagggag
cgcccgatggaccggctgctctgtggagatgtcggttatggaaaaactgaagtcgccatc
cgggcggctttcaaggccatcatggacggaaaacaggtggctgttcttgtaccaacaact
attcttgcccaacagcattttgaaacaataaaagaacgattcaacggttatcccattaac
atcagcctgctcagtcgtttcagaacaaagaaacagcagactgaaacaactaaaggcttg
aaaaatggaacgattgatcttgtcattggaacccatcgtttgttatctaaagatataaaa
tttgcggacctcggcctgctaattgttgacgaggaacagcgttttggagttacccataag
gaaaaaatcaaacagctgaaaacaaatgtagacgtcctgactttgacggcgacacctatc
ccgcgaacacttcatatgtccatgcttggagttcgggacctatccgttattgaaacgccg
ccggaaaaccgtttcccggttcagacatatgtcatggagtataacggaatttttgtaaaa
gaggcgattgaacgtgagttggcccgcgatggtcaggtttatttcctttacaatcgcgtg
gaggacattgaaaggaaagctgaggaaatctccatgcttgtccctgatgcccgggttgcc
tatgcccatggacagatgggagaatcggagttagaagcggtcattttaagcttcttggac
ggtgaatttgatgtgctcgtgacaactacgatcattgaaacaggcgtagatattccgagc
gtcaacacattaattgtccatgatgcagaccgcatggggctttcccagttgtatcagctg
cggggacgggtaggacgttccaatagggttgcttatgcctactttacttatcgtaaagac
aaggtactgaccgaaattgcggaaaaaaggcttcaggccattaaagaatttactgagctg
ggttcaggttttaaaattgccatgcgtgatttatccatccggggggcaggaaatctgctc
ggggcccagcagcacggcttcatcgactctgtcggttttgacctgtactctcaaatgctg
aaagaggccatagaagagcgtaagggaggagctccggcaactgctcctttgttcgaagtg
gaattggaattggatgcctatattccagatgcatatattggcgacagccagcagaaaatt
gagatgtataagcgtttccgaaatatagagtcattggaagaagtagaagagctcaaagag
gaaatgatcgaccgtttcggcgattatccggagcaagtgagctatttgttcacagtggcc
gaaatgaaagtacatgccagggctattaaacttacatccattaagcagtccaaaggggaa
gtcgtcatttatttttcagaggaaggcacgaatgaaattgacggcagtaaagtattccag
gtgacgaaccgctacggacggattgtgggtcttggaatggagggcagccaattgaaaata
agccttcaaatcaaccggctgtcaacagatgagtggctctccatagcatcggatataatc
gtagaattaaaaacagcaaggaaagcggaagcgaccgtttag
DBGET
integrated database retrieval system
